Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS319E01f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC725.06c |ppk31|mug25|serine/threonine protein kinase Ppk31 |... 29 0.56
SPAC26A3.09c |rga2||GTPase activating protein Rga2|Schizosacchar... 26 3.0
SPBP4H10.04 |ppb1||calcineurin catalytic subunit Ppb1|Schizosacc... 26 3.0
SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces pombe... 26 3.9
SPAC6B12.09 |trm10||tRNA m|Schizosaccharomyces pombe|chr 1|||Manual 25 5.2
SPBC1734.02c |cdc27|SPBC337.18c|DNA polymerase delta subunit Cdc... 25 6.8
SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces... 25 6.8
SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit R... 25 9.0
SPAC5D6.02c |mug165||sequence orphan|Schizosaccharomyces pombe|c... 25 9.0
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 25 9.0
>SPBC725.06c |ppk31|mug25|serine/threonine protein kinase Ppk31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1032
Score = 28.7 bits (61), Expect = 0.56
Identities = 8/24 (33%), Positives = 18/24 (75%)
Frame = +3
Query: 363 KFEITVPDELKDYLHDIHSAKVEN 434
+++ VP +++DY +D+HS ++N
Sbjct: 317 EYDFLVPSKIQDYFYDVHSLLLKN 340
>SPAC26A3.09c |rga2||GTPase activating protein
Rga2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1275
Score = 26.2 bits (55), Expect = 3.0
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +3
Query: 369 EITVPDELKDYLHDIHSAKVENAHKE 446
E D L++YLHD+ E+A KE
Sbjct: 698 EFLSSDTLREYLHDVFFLPPEHAQKE 723
>SPBP4H10.04 |ppb1||calcineurin catalytic subunit
Ppb1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 554
Score = 26.2 bits (55), Expect = 3.0
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = -1
Query: 374 YFKLVKCVFVYWGLR*FYPKTIF 306
YF ++C+ W L+ +YPKT++
Sbjct: 153 YFS-IECLLYLWALKIWYPKTLW 174
>SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 882
Score = 25.8 bits (54), Expect = 3.9
Identities = 9/17 (52%), Positives = 10/17 (58%)
Frame = -2
Query: 454 FWNSLCAFSTFALWMSW 404
FW+ L FA WMSW
Sbjct: 331 FWDGLWLNEGFATWMSW 347
>SPAC6B12.09 |trm10||tRNA m|Schizosaccharomyces pombe|chr 1|||Manual
Length = 304
Score = 25.4 bits (53), Expect = 5.2
Identities = 7/18 (38%), Positives = 13/18 (72%)
Frame = +3
Query: 255 LVIEYLEWDNCYTEIVPK 308
L +EY +W+ + E++PK
Sbjct: 254 LWLEYRDWEKAFMEVIPK 271
>SPBC1734.02c |cdc27|SPBC337.18c|DNA polymerase delta subunit
Cdc27|Schizosaccharomyces pombe|chr 2|||Manual
Length = 372
Score = 25.0 bits (52), Expect = 6.8
Identities = 14/52 (26%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Frame = +3
Query: 48 LDNEVLVAFENDWQPESKFPFSQVFLPPKDT--GKHTEFTENQEVEVFARSN 197
+D+E+ + + + QP S FP Q L K + K + + +FA S+
Sbjct: 60 IDDEINLEIDEESQPISNFPVLQYILCDKSSLQEKQSRLKSGYKTVIFALSS 111
>SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 711
Score = 25.0 bits (52), Expect = 6.8
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = +3
Query: 282 NCYTEIVPKDRLRVKL 329
N YT+IVP D+ RV+L
Sbjct: 462 NRYTDIVPYDKTRVRL 477
>SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit
Rec11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 923
Score = 24.6 bits (51), Expect = 9.0
Identities = 12/39 (30%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Frame = -1
Query: 263 YHKEITPHH---LDICSPPPTRFFLIRPSKYFHLLVLSK 156
+HK+ + + LDI + F +I S++FH L ++K
Sbjct: 642 FHKDFSKLYKEILDIFNSTTVNFLMILCSRFFHRLAVNK 680
>SPAC5D6.02c |mug165||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 300
Score = 24.6 bits (51), Expect = 9.0
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = -3
Query: 123 RKLEKTETLILAASHFQRLLEPRCRARR*QWPYNKHHFHR 4
+ LEKTE LI SHF +L + R + + + H+ +
Sbjct: 154 KNLEKTEDLIRTDSHF--VLNKELLSFRNDYEHRRKHYEK 191
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 24.6 bits (51), Expect = 9.0
Identities = 17/67 (25%), Positives = 32/67 (47%)
Frame = +3
Query: 234 KMMRGDFLVIEYLEWDNCYTEIVPKDRLRVKLPKTPIDKNTFHKFEITVPDELKDYLHDI 413
K R D +E L+ NC K L KL +T + +TF + ++ +E+++ ++
Sbjct: 1345 KYERVDPTQLEELK-KNCEALEKEKQELETKLQETAKETDTFKQQVNSLNEEVENLKKEV 1403
Query: 414 HSAKVEN 434
A +N
Sbjct: 1404 EQANTKN 1410
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,133,598
Number of Sequences: 5004
Number of extensions: 44680
Number of successful extensions: 133
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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