Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS319E01f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0476 - 18547223-18548187,18548743-18549958 27 0.95
03_05_0205 - 21965782-21965979,21969169-21969417 29 1.7
10_02_0167 - 6100676-6102111,6102174-6102708,6102967-6103975,610... 28 4.0
07_03_1689 + 28710936-28711129,28711283-28711341,28711858-287118... 28 5.2
01_06_1696 + 39256171-39256393,39256513-39256595,39256692-392568... 28 5.2
11_01_0620 - 4964263-4965052,4965578-4965663,4966332-4966413,496... 27 6.9
08_02_0824 + 21561699-21562415,21563294-21563362,21563424-215634... 27 6.9
03_06_0274 + 32797541-32797570,32797682-32797769,32798291-327984... 27 6.9
05_07_0173 + 28140484-28140869,28141079-28141481,28141719-281417... 27 9.1
04_04_1630 - 34896021-34896143,34896329-34896403,34896500-348965... 27 9.1
>07_03_0476 - 18547223-18548187,18548743-18549958
Length = 726
Score = 27.1 bits (57), Expect(2) = 0.95
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = -3
Query: 456 PSGTPCARSPPSRCGCR 406
PSGTP PP+R GC+
Sbjct: 330 PSGTPRPGPPPTRTGCQ 346
Score = 21.8 bits (44), Expect(2) = 0.95
Identities = 6/17 (35%), Positives = 10/17 (58%)
Frame = -3
Query: 294 PCNSYPILDILSQGNHP 244
PC +Y + + + NHP
Sbjct: 355 PCRTYRVAKFVPEHNHP 371
>03_05_0205 - 21965782-21965979,21969169-21969417
Length = 148
Score = 29.5 bits (63), Expect = 1.7
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = -3
Query: 441 CARSPPSRCGCRGGSPSVHQVL 376
C R+PPS C G P+V++V+
Sbjct: 16 CRRAPPSAAACGGARPAVYRVV 37
>10_02_0167 -
6100676-6102111,6102174-6102708,6102967-6103975,
6104006-6105036
Length = 1336
Score = 28.3 bits (60), Expect = 4.0
Identities = 18/73 (24%), Positives = 33/73 (45%)
Frame = +3
Query: 87 QPESKFPFSQVFLPPKDTGKHTEFTENQEVEVFARSNEKEACGWWTANIKMMRGDFLVIE 266
+P+S +P S + + G T ++ + +V E+E C W M+ IE
Sbjct: 451 EPDSAYPDSDLHVSHIFGGSTTYSSKREYKKV-----EREVCSTWQGAAPKMKWSEQKIE 505
Query: 267 YLEWDNCYTEIVP 305
+ E D+ T ++P
Sbjct: 506 FSEEDHPKTSVIP 518
>07_03_1689 +
28710936-28711129,28711283-28711341,28711858-28711892,
28712123-28712226,28712325-28712397,28712495-28712553,
28712656-28712721,28712815-28712898,28712995-28713059,
28713152-28713342,28713522-28713612,28714076-28714134,
28714732-28714872,28715214-28715321
Length = 442
Score = 27.9 bits (59), Expect = 5.2
Identities = 11/19 (57%), Positives = 15/19 (78%), Gaps = 1/19 (5%)
Frame = +3
Query: 261 IEYLEWDNCYT-EIVPKDR 314
++YL++DNCY I PKDR
Sbjct: 157 VDYLKYDNCYNLGIKPKDR 175
>01_06_1696 +
39256171-39256393,39256513-39256595,39256692-39256831,
39256882-39257398,39257518-39257565,39257832-39258006,
39258122-39258234,39258329-39258425,39258579-39258798,
39258985-39259144,39259233-39259646
Length = 729
Score = 27.9 bits (59), Expect = 5.2
Identities = 24/95 (25%), Positives = 44/95 (46%), Gaps = 3/95 (3%)
Frame = -2
Query: 517 RESTASTARSGTYQTSAAPIAFWNSLCAFSTFALWMSWR*SFSSSGTVISNL*NVF-LSI 341
+ AS + TY++ P+A +N+ + F MS + TV +++ V S+
Sbjct: 415 QNGVASPSILQTYESERRPVAIFNTELSVENFKAAMSIPAALGLDPTVANSVHQVINSSL 474
Query: 340 GVFGNFTLRRSL--GTISV*QLSHSRYSITRKSPL 242
G L++S+ G S+ + S Y + K+PL
Sbjct: 475 GSVIPRNLQKSVLEGLFSIGRAQVSDYILNEKNPL 509
>11_01_0620 -
4964263-4965052,4965578-4965663,4966332-4966413,
4967052-4967156,4967600-4967772,4967988-4968101,
4973939-4974037,4974320-4974398,4975424-4975492,
4975955-4976061
Length = 567
Score = 27.5 bits (58), Expect = 6.9
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = +3
Query: 90 PESKFPFSQVFLPPKDTGKHTEFTENQEVEVFARSNEK 203
P+S+ P+ LPP + K FTE V+ + + K
Sbjct: 321 PKSERPYPSPLLPPPPSSKRPVFTEASSVDYLSGDSYK 358
>08_02_0824 +
21561699-21562415,21563294-21563362,21563424-21563459,
21564533-21564600,21565259-21565277,21565662-21565763,
21566173-21566288,21566501-21566595,21568093-21568264,
21568413-21568493,21569732-21569801,21570106-21570132
Length = 523
Score = 27.5 bits (58), Expect = 6.9
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = -3
Query: 459 SPSGTPCARSPPSRCGCRGG 400
S PCA SPP+R CRGG
Sbjct: 48 SSEALPCAASPPAR--CRGG 65
>03_06_0274 +
32797541-32797570,32797682-32797769,32798291-32798401,
32798678-32798765,32798918-32799022,32799117-32799617,
32799749-32799884,32800023-32800216,32800306-32800414,
32800803-32800982
Length = 513
Score = 27.5 bits (58), Expect = 6.9
Identities = 12/19 (63%), Positives = 15/19 (78%)
Frame = -2
Query: 154 SVCLPVSLGGKKT*ENGNF 98
SVC PVSLGG+ + +GNF
Sbjct: 245 SVCDPVSLGGRPSDFDGNF 263
>05_07_0173 +
28140484-28140869,28141079-28141481,28141719-28141781,
28142350-28142535,28144695-28145076,28145689-28145780,
28145988-28146737,28146969-28147100,28147149-28147247,
28147977-28148132,28150187-28150317,28150798-28151254,
28151327-28151668,28152137-28153001,28153112-28153170,
28153806-28154261,28154835-28154873,28155016-28155201
Length = 1727
Score = 27.1 bits (57), Expect = 9.1
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = -1
Query: 194 RPSKYFHLLVLSKFCVFASVFRW*ENLRK 108
RP + H+L KF + + +W E L K
Sbjct: 495 RPKRILHMLKKKKFVLMVELHKWLERLEK 523
>04_04_1630 - 34896021-34896143,34896329-34896403,34896500-34896556,
34897176-34897352,34897426-34897492,34898043-34898101,
34898188-34898241,34898455-34898604,34898709-34898918,
34898980-34899039,34899399-34899527,34899616-34899720,
34899935-34900024,34900630-34900695,34901047-34901115,
34901348-34901467,34901572-34901634,34901681-34901817,
34902070-34902160,34902298-34902463,34902700-34904172,
34905666-34905940,34906322-34906819,34906996-34907145,
34907840-34907911,34908006-34908266,34908478-34908558,
34908745-34908996,34909323-34909382,34909602-34909853,
34910385-34910549,34910589-34910849,34911267-34912307,
34913398-34913457,34914055-34914165,34914448-34914534,
34915227-34915300,34915397-34915490,34915644-34915689,
34916397-34916521
Length = 2501
Score = 27.1 bits (57), Expect = 9.1
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +3
Query: 414 HSAKVENAHKEFQKAIGAALVWYVPERAVLAVLSR 518
H K+ N +EF+ ++GA V Y+ R +L V R
Sbjct: 1157 HYPKILNILREFEGSVGAYHVSYLATRKLLEVADR 1191
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,583,568
Number of Sequences: 37544
Number of extensions: 306567
Number of successful extensions: 838
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 817
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 838
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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