Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS319D12f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 57 2e-09
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 37 0.002
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 32 0.045
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 31 0.14
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 29 0.42
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 29 0.56
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 28 0.73
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 28 0.73
SPAC13F5.03c |||glycerol dehydrogenase |Schizosaccharomyces pomb... 28 0.97
SPAC3G9.08 |png1||ING family homolog Png1|Schizosaccharomyces po... 27 2.2
SPBC317.01 |mbx2|pvg4|MADS-box transcription factor Pvg4|Schizos... 26 3.0
SPCC736.05 |wtf7||wtf element Wtf7|Schizosaccharomyces pombe|chr... 26 3.9
SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3 |Schizos... 25 5.2
SPBC1D7.05 |byr2|ste8, SPBC2F12.01|MAP kinase kinase kinase Byr2... 25 6.8
SPAC14C4.15c ||SPAPJ760.01c|dipeptidyl aminopeptidase |Schizosac... 25 6.8
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 25 9.0
SPAC9G1.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 25 9.0
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 56.8 bits (131), Expect = 2e-09
Identities = 39/127 (30%), Positives = 51/127 (40%)
Frame = -1
Query: 383 PDPSAATGSAPHTCGIIGTSPDTCSSAPDDTPAGIMPPCCSPAGVIPPCCRPAGVIPPCC 204
P PS A P G + ++ P P+G PP P+ PP P+ IPP
Sbjct: 1124 PKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGA-PPVPKPSVAAPPVPAPSSGIPPVP 1182
Query: 203 SPTGVMAPC*SPAGVMPPCWSPTGVMLPCCRPAGVIPPCCNPTGVMPPCSNPPGVIPPWC 24
P + P P PP P+ V +P P PP P+ +PP P PP
Sbjct: 1183 KPAAGVPPV-PPPSEAPPVPKPS-VGVPPVPPPSTAPPVPTPSAGLPPVPVPTAKAPP-- 1238
Query: 23 KPAPRAE 3
PAP +E
Sbjct: 1239 VPAPSSE 1245
Score = 56.4 bits (130), Expect = 2e-09
Identities = 42/133 (31%), Positives = 58/133 (43%)
Frame = -1
Query: 410 AGGGADSARPDPSAATGSAPHTCGIIGTSPDTCSSAPDDTPAGIMPPCCSPAGVIPPCCR 231
+ GA SA P A + P + P + P P+GI PP P+ PP +
Sbjct: 1055 SSSGAPSAPPPVPAPSSEIP-------SIPAPSGAPPVPAPSGI-PPVPKPSVAAPPVPK 1106
Query: 230 PAGVIPPCCSPTGVMAPC*SPAGVMPPCWSPTGVMLPCCRPAGVIPPCCNPTGVMPPCSN 51
P+ +PP +P+G P P+ PP P+G P +P+ PP P+G PP
Sbjct: 1107 PSVAVPPVPAPSGA-PPVPKPSVAAPPVPVPSGAP-PVPKPSVAAPPVPAPSGA-PPVPK 1163
Query: 50 PPGVIPPWCKPAP 12
P PP PAP
Sbjct: 1164 PSVAAPP--VPAP 1174
Score = 51.2 bits (117), Expect = 9e-08
Identities = 37/130 (28%), Positives = 54/130 (41%), Gaps = 2/130 (1%)
Frame = -1
Query: 389 ARPDPSAATGSAPHTCGIIGTSPDTCSSA--PDDTPAGIMPPCCSPAGVIPPCCRPAGVI 216
A P A +G+ P + P S P P+ PP +P+G PP +P+
Sbjct: 1110 AVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGA-PPVPKPSVAA 1168
Query: 215 PPCCSPTGVMAPC*SPAGVMPPCWSPTGVMLPCCRPAGVIPPCCNPTGVMPPCSNPPGVI 36
PP +P+ + P PA +PP P P +P+ +PP P PP P +
Sbjct: 1169 PPVPAPSSGIPPVPKPAAGVPPV-PPPSEAPPVPKPSVGVPP-VPPPSTAPPVPTPSAGL 1226
Query: 35 PPWCKPAPRA 6
PP P +A
Sbjct: 1227 PPVPVPTAKA 1236
Score = 50.8 bits (116), Expect = 1e-07
Identities = 33/117 (28%), Positives = 45/117 (38%)
Frame = -1
Query: 383 PDPSAATGSAPHTCGIIGTSPDTCSSAPDDTPAGIMPPCCSPAGVIPPCCRPAGVIPPCC 204
P PS A P G + ++ P P+ +PP PA +PP P PP
Sbjct: 1143 PKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPP-VPPPSEAPPVP 1201
Query: 203 SPTGVMAPC*SPAGVMPPCWSPTGVMLPCCRPAGVIPPCCNPTGVMPPCSNPPGVIP 33
P+ V P P PP +P+ + P P PP P+ P S P +P
Sbjct: 1202 KPS-VGVPPVPPPSTAPPVPTPSAGLPPVPVPTAKAPPVPAPSSEAPSVSTPRSSVP 1257
Score = 47.6 bits (108), Expect = 1e-06
Identities = 30/102 (29%), Positives = 40/102 (39%)
Frame = -1
Query: 323 PDTCSSAPDDTPAGIMPPCCSPAGVIPPCCRPAGVIPPCCSPTGVMAPC*SPAGVMPPCW 144
P + P P+ PP +P+ IPP +PA +PP P P P+ +PP
Sbjct: 1153 PAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPP-VPPPSEAPPVPKPSVGVPPV- 1210
Query: 143 SPTGVMLPCCRPAGVIPPCCNPTGVMPPCSNPPGVIPPWCKP 18
P P P+ +PP PT PP P P P
Sbjct: 1211 PPPSTAPPVPTPSAGLPPVPVPTAKAPPVPAPSSEAPSVSTP 1252
Score = 40.7 bits (91), Expect = 1e-04
Identities = 28/117 (23%), Positives = 39/117 (33%)
Frame = -1
Query: 383 PDPSAATGSAPHTCGIIGTSPDTCSSAPDDTPAGIMPPCCSPAGVIPPCCRPAGVIPPCC 204
P PS A P I P + P P PP P+ +PP P PP
Sbjct: 1162 PKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPV-PPPSTAPPVP 1220
Query: 203 SPTGVMAPC*SPAGVMPPCWSPTGVMLPCCRPAGVIPPCCNPTGVMPPCSNPPGVIP 33
+P+ + P P PP +P+ P +P + P S+ P
Sbjct: 1221 TPSAGLPPVPVPTAKAPPVPAPSSEAPSVSTPRSSVPSPHSNASPSPTSSSMASAAP 1277
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 36.7 bits (81), Expect = 0.002
Identities = 28/110 (25%), Positives = 46/110 (41%), Gaps = 4/110 (3%)
Frame = -1
Query: 326 SPDTCSSAPDDTPAGIMPPCCSPAGVIPPCCRPAGVIPPCCSPTGVMAPC*SPAGVMPPC 147
S T AP + ++PP A V P + G++ +P+ AP +P +PP
Sbjct: 1431 SQPTNPGAPSNHAPQVVPPAPMHA-VAPVQPKAPGMVTNAPAPSSAPAPP-APVSQLPPA 1488
Query: 146 WS--PTGVMLPCC--RPAGVIPPCCNPTGVMPPCSNPPGVIPPWCKPAPR 9
P M+P +P + P P+ +PP + +P PAP+
Sbjct: 1489 VPNVPVPSMIPSVAQQPPSSVAPATAPSSTLPPSQSSFAHVPSPAPPAPQ 1538
Score = 25.8 bits (54), Expect = 3.9
Identities = 19/65 (29%), Positives = 26/65 (40%)
Frame = -1
Query: 377 PSAATGSAPHTCGIIGTSPDTCSSAPDDTPAGIMPPCCSPAGVIPPCCRPAGVIPPCCSP 198
P G AP G + T P + + P G + P GV+ P +P G + P
Sbjct: 179 PQKTGGFAPQATGFMQTQPFGAAPSFAPQPTGFVQP--QQTGVVMP-PQPTGYLQ--AQP 233
Query: 197 TGVMA 183
TG A
Sbjct: 234 TGPFA 238
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 32.3 bits (70), Expect = 0.045
Identities = 34/110 (30%), Positives = 44/110 (40%), Gaps = 4/110 (3%)
Frame = -1
Query: 407 GGGADSARPDPSAATGSAPHTCGIIGTSPDTCSSAPDDTPAGIMP-PCCSPA--GVIPPC 237
G + SA P PSA P + TS S P +PA P P +P +PP
Sbjct: 116 GKSSASAAP-PSAPAPPTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPP 174
Query: 236 CRPAGVIP-PCCSPTGVMAPC*SPAGVMPPCWSPTGVMLPCCRPAGVIPP 90
+PA + P +P+ A P V PP S V RP+ PP
Sbjct: 175 AQPAAPVKSPPSAPSLPSAVPPMPPKVPPPPLSQAPVANTSSRPSSFAPP 224
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 30.7 bits (66), Expect = 0.14
Identities = 24/82 (29%), Positives = 29/82 (35%), Gaps = 1/82 (1%)
Frame = -1
Query: 275 PPCCSP-AGVIPPCCRPAGVIPPCCSPTGVMAPC*SPAGVMPPCWSPTGVMLPCCRPAGV 99
PP P AG PP P +PP P G A +P P + +P
Sbjct: 1886 PPMALPKAG--PPSAAPTSALPPAGPPAGATAISGNPGMPAPVPLTGKETAVPLSSMPNA 1943
Query: 98 IPPCCNPTGVMPPCSNPPGVIP 33
PP +PP SN V P
Sbjct: 1944 -PPSVASNAKLPPASNNRKVDP 1964
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 29.1 bits (62), Expect = 0.42
Identities = 27/87 (31%), Positives = 33/87 (37%), Gaps = 1/87 (1%)
Frame = -1
Query: 407 GGGADSARPDPSAATGSAPHTCGIIGTSPDTCSSAPDDTPAGIMPPCCSPAGVIPPCCRP 228
G A + P +A+ S P + T P SAP P P A PP
Sbjct: 397 GRSAPALPPLGNASRTSTPP----VPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPS 452
Query: 227 AGVIPPCCSPTGV-MAPC*SPAGVMPP 150
A + PP P G+ AP PA PP
Sbjct: 453 APIAPPL--PAGMPAAPPLPPAAPAPP 477
Score = 27.5 bits (58), Expect = 1.3
Identities = 36/113 (31%), Positives = 45/113 (39%), Gaps = 7/113 (6%)
Frame = -1
Query: 332 GTSPDTCSSAPDDTPAGIMPPCCSPAGVIP--PCCRPAGVIPPCCSP--TGVMAPC*SPA 165
G P S+ P PP + AG IP P R A PP S TG P S +
Sbjct: 323 GKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPPLSSS 382
Query: 164 GVM--PPCWSPTGVMLPCCRPAGVIPPCCNPTGV-MPPCSNPPGVIPPWCKPA 15
+ PP P +P R A +PP N + PP PP +PP P+
Sbjct: 383 RAVSNPPAPPPA---IPG-RSAPALPPLGNASRTSTPPVPTPPS-LPPSAPPS 430
Score = 26.6 bits (56), Expect = 2.2
Identities = 17/46 (36%), Positives = 21/46 (45%)
Frame = -1
Query: 392 SARPDPSAATGSAPHTCGIIGTSPDTCSSAPDDTPAGIMPPCCSPA 255
S+RP + SAP I S T SS P+ P I P +PA
Sbjct: 238 SSRPPERVPSLSAPAPPPIPPPSNGTVSSPPNSPPRPIAPVSMNPA 283
Score = 24.6 bits (51), Expect = 9.0
Identities = 20/63 (31%), Positives = 24/63 (38%)
Frame = -1
Query: 203 SPTGVMAPC*SPAGVMPPCWSPTGVMLPCCRPAGVIPPCCNPTGVMPPCSNPPGVIPPWC 24
+PT AP P+ +P P V IPP N T PP S P + P
Sbjct: 223 TPTSTSAPPIPPS--IPSSRPPERVPSLSAPAPPPIPPPSNGTVSSPPNSPPRPIAPVSM 280
Query: 23 KPA 15
PA
Sbjct: 281 NPA 283
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 28.7 bits (61), Expect = 0.56
Identities = 19/49 (38%), Positives = 23/49 (46%), Gaps = 4/49 (8%)
Frame = -1
Query: 140 PTGVMLPCCRPAGV-IPPCCNPTGVMPPCSNPPGVI---PPWCKPAPRA 6
P V++P PA + +PP G PP PPGV PP P P A
Sbjct: 736 PPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPA 784
Score = 26.6 bits (56), Expect = 2.2
Identities = 22/60 (36%), Positives = 24/60 (40%), Gaps = 1/60 (1%)
Frame = -1
Query: 308 SAPDDTPAGIMP-PCCSPAGVIPPCCRPAGVIPPCCSPTGVMAPC*SPAGVMPPCWSPTG 132
S P PA I+P P +P V PP G PP P GV P PP S G
Sbjct: 731 SPPPPPPAVIVPTPAPAPIPVPPPAPIMGGP-PPPPPPPGVAGAGPPPPPPPPPAVSAGG 789
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 28.3 bits (60), Expect = 0.73
Identities = 27/94 (28%), Positives = 35/94 (37%), Gaps = 3/94 (3%)
Frame = +1
Query: 172 LQHGAMTPVGLQHGGM-TPAGLQHGGMTPAGLQHGGMIPAGVSSGALLQVSGEVPMMPQV 348
+Q+GA P+ GG PA + GM P H G +P G P P +
Sbjct: 474 VQYGATGPLIYGPGGYPIPAAVNGRGM-PMVPGHNGPMPMYPGMPTQFPAGGPAPGYPGM 532
Query: 349 CGAEPVAALGSGRAL--SAPPPADHLAHSVPLEP 444
PV A G + S P A +VP P
Sbjct: 533 NARGPVPAQGRPMMMPGSVPSAGPAEAEAVPAVP 566
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 28.3 bits (60), Expect = 0.73
Identities = 30/136 (22%), Positives = 41/136 (30%), Gaps = 6/136 (4%)
Frame = -1
Query: 401 GADSARPDPSAATGSAPHTCGIIGTSPDTCSSAPD--DTPAGIMPPCCSPAGVIPPCCRP 228
G S+ P T T P T +S+ D +P C+ + IPP
Sbjct: 238 GGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSSPLPTTSTSCTTSTSIPPTGNS 297
Query: 227 AGVIPPCCSPTGVMAPC*SPAGVMPPCWSPTGVMLP----CCRPAGVIPPCCNPTGVMPP 60
+ P PT + P + LP C + IPP N T + P
Sbjct: 298 TTPVTPTVPPTSTSSTSTPPPPASTSSTGTSSSPLPSTSTSCTTSTSIPPTGNSTTPVTP 357
Query: 59 CSNPPGVIPPWCKPAP 12
P P P
Sbjct: 358 TVPPTSTSSTSTPPPP 373
>SPAC13F5.03c |||glycerol dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 450
Score = 27.9 bits (59), Expect = 0.97
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = +1
Query: 187 MTPVGLQHGGMTPAGLQHGGMTPA-GLQHGGMIPAGVSSGALLQV 318
M+ +G ++GG+ A H GMT G H M V+ G L+QV
Sbjct: 301 MSGLGFENGGLAAAHAIHNGMTAIHGPVHRLMHGEKVAYGTLVQV 345
Score = 25.0 bits (52), Expect = 6.8
Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = +1
Query: 13 GAGLHHGGMTPGGLEHGGMTPV-GLQHGGMTPAGLQHGSMTPVGLQ 147
G G +GG+ H GMT + G H M + +G++ V L+
Sbjct: 303 GLGFENGGLAAAHAIHNGMTAIHGPVHRLMHGEKVAYGTLVQVVLE 348
>SPAC3G9.08 |png1||ING family homolog Png1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 283
Score = 26.6 bits (56), Expect = 2.2
Identities = 15/60 (25%), Positives = 23/60 (38%)
Frame = +1
Query: 94 GMTPAGLQHGSMTPVGLQHGGMTPAGLQHGAMTPVGLQHGGMTPAGLQHGGMTPAGLQHG 273
G T A L + +GG +P+G TP + G T + T +Q+G
Sbjct: 116 GFTAAELLNAPDYYASSPYGGYSPSGASSARQTPAPSRSGASTAGRRRTSATTRGAIQNG 175
Score = 25.8 bits (54), Expect = 3.9
Identities = 12/42 (28%), Positives = 19/42 (45%)
Frame = +1
Query: 88 HGGMTPAGLQHGSMTPVGLQHGGMTPAGLQHGAMTPVGLQHG 213
+GG +P+G TP + G T + A T +Q+G
Sbjct: 134 YGGYSPSGASSARQTPAPSRSGASTAGRRRTSATTRGAIQNG 175
Score = 24.6 bits (51), Expect = 9.0
Identities = 12/42 (28%), Positives = 19/42 (45%)
Frame = +1
Query: 58 HGGMTPVGLQHGGMTPAGLQHGSMTPVGLQHGGMTPAGLQHG 183
+GG +P G TPA + G+ T + T +Q+G
Sbjct: 134 YGGYSPSGASSARQTPAPSRSGASTAGRRRTSATTRGAIQNG 175
>SPBC317.01 |mbx2|pvg4|MADS-box transcription factor
Pvg4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 372
Score = 26.2 bits (55), Expect = 3.0
Identities = 18/53 (33%), Positives = 20/53 (37%), Gaps = 2/53 (3%)
Frame = +1
Query: 331 PMMPQVCGAEPVAALGSGRALSAPP--PADHLAHSVPLEPLHNPLDDHDHLQN 483
P + C EP L S S PP P H H P H+P H H N
Sbjct: 141 PQVQSYCRPEP---LSSNHVRSCPPFPPTQH--HHPHTRPPHHPPHPHFHNNN 188
>SPCC736.05 |wtf7||wtf element Wtf7|Schizosaccharomyces pombe|chr
3|||Manual
Length = 220
Score = 25.8 bits (54), Expect = 3.9
Identities = 9/20 (45%), Positives = 11/20 (55%)
Frame = -1
Query: 104 GVIPPCCNPTGVMPPCSNPP 45
G++P C G PCS PP
Sbjct: 30 GLLPKCNTGNGGTTPCSEPP 49
>SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 732
Score = 25.4 bits (53), Expect = 5.2
Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
Frame = -1
Query: 410 AGGGADSARPDPSA-ATGSAPHTCGIIGTSPDTCSSAPDDTPAGIMPPCCSPAGVIPPCC 234
A G + + + D S + S T IGTS S PD + GI +P+ V+ P
Sbjct: 288 ANGNSPTLKNDSSFFGSASVRPTVSPIGTS--FRQSLPDISAFGIPKTETNPSEVVAPGT 345
Query: 233 RPAGVIP 213
P V+P
Sbjct: 346 IPISVLP 352
>SPBC1D7.05 |byr2|ste8, SPBC2F12.01|MAP kinase kinase kinase
Byr2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 659
Score = 25.0 bits (52), Expect = 6.8
Identities = 14/52 (26%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Frame = +1
Query: 298 SGALLQVSGEVPMMPQVC-GAEPVAALGSGRALSAPPPADHLAHSVPLEPLH 450
S + V+ +V +P++ G +P + S + +S PP V +EPL+
Sbjct: 277 SSLRISVAEDVNRLPRIDRGFDPPLTVSSTQRISRPPSLQKSITMVGVEPLY 328
>SPAC14C4.15c ||SPAPJ760.01c|dipeptidyl aminopeptidase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 853
Score = 25.0 bits (52), Expect = 6.8
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = +1
Query: 445 LHNPLDDHDHLQNGMQMT 498
LH DD+ H++N MQ+T
Sbjct: 790 LHGTSDDNVHIENTMQLT 807
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 24.6 bits (51), Expect = 9.0
Identities = 11/23 (47%), Positives = 11/23 (47%)
Frame = -1
Query: 80 PTGVMPPCSNPPGVIPPWCKPAP 12
P G PP PPG PP P P
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPPPP 27
>SPAC9G1.07 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 418
Score = 24.6 bits (51), Expect = 9.0
Identities = 11/17 (64%), Positives = 12/17 (70%)
Frame = -1
Query: 329 TSPDTCSSAPDDTPAGI 279
+SP T SAP DTPA I
Sbjct: 360 SSPSTSLSAPKDTPAVI 376
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.314 0.136 0.426
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,986,621
Number of Sequences: 5004
Number of extensions: 44921
Number of successful extensions: 180
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
- SilkBase 1999-2023 -