Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS319D10f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1347.01c |rev1|SPBC215.16c|deoxycytidyl transferase Rev1 |Sc...    48   8e-07
SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid alpha...    26   3.9  
SPBC409.08 |||spermine family transporter |Schizosaccharomyces p...    25   5.2  
SPAC9G1.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    25   5.2  
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca...    25   5.2  
SPCC63.10c |||dolichol kinase |Schizosaccharomyces pombe|chr 3||...    25   6.8  
SPBC16G5.07c |||prohibitin |Schizosaccharomyces pombe|chr 2|||Ma...    25   9.0  
SPBC336.01 |fbh1|fdh1, fdh|DNA helicase I|Schizosaccharomyces po...    25   9.0  
SPBC365.08c |||Der1-like |Schizosaccharomyces pombe|chr 2|||Manual     25   9.0  

>SPBC1347.01c |rev1|SPBC215.16c|deoxycytidyl transferase Rev1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 935

 Score = 48.0 bits (109), Expect = 8e-07
 Identities = 23/64 (35%), Positives = 38/64 (59%)
 Frame = +2

Query: 2   KFMGHGYCNVINKSNNLPAATNDVEVLTQETIEIFKKINVDAKEMRGVGIQVTKLVLIIK 181
           K++G G      KS+   +ATN  +++ ++   ++K INVD  ++RG+G+Q  K   IIK
Sbjct: 578 KYLGAGEVTSFTKSSTFTSATNSFDLIWKKVTSMYKTINVDPGDVRGIGLQALK---IIK 634

Query: 182 QQSK 193
             SK
Sbjct: 635 DNSK 638


>SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid
           alpha-glucosyltransferase Alg10|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 445

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = -3

Query: 249 SLLIFMIVGLLQRNLLMAPLLCCLIISTNFVTCIPTPLI 133
           S LI     L    L M  L   L+IST  +T +P PL+
Sbjct: 346 SYLILYYFFLDISKLQMTSLTFFLLISTTILTLVPAPLV 384


>SPBC409.08 |||spermine family transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 539

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = -3

Query: 246 LLIFMIVGLLQRNLLMAPLLCCLIISTNFVTCIPTPLISLASTFI 112
           L+  MI  +LQ    +AP + CL+I   F  C     ++LA   I
Sbjct: 171 LVTLMIYIVLQIPCALAPNIACLLIVRFFCGCFGCTPLTLAGGVI 215


>SPAC9G1.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 418

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 10/52 (19%), Positives = 27/52 (51%)
 Frame = +2

Query: 26  NVINKSNNLPAATNDVEVLTQETIEIFKKINVDAKEMRGVGIQVTKLVLIIK 181
           N+ N ++ +P+ TNDV    + ++     +N+D   ++ +  ++     ++K
Sbjct: 24  NISNSNSAIPSITNDVSFSMEASVWKENALNLDTFNLKDINEKLDYTFGVVK 75


>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
            synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 2410

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = -1

Query: 503  NFVVSSLDS*M-VYLWLLLRIYLWHVFFLFV 414
            NF +SSL+     YLW +  I+ W +F L V
Sbjct: 2209 NFWLSSLNGRSWSYLWDIGNIHQWQIFLLIV 2239


>SPCC63.10c |||dolichol kinase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 465

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = -3

Query: 261 SVLDSLLIFMIVGLLQRNLLMAPLLCCLIISTNFVTCI 148
           SVL  +L+  +  L+  NL +  L   L +S  F TC+
Sbjct: 148 SVLSGVLLISLPTLILLNLCILKLAAKLHLSALFTTCL 185


>SPBC16G5.07c |||prohibitin |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 354

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 8/23 (34%), Positives = 17/23 (73%)
 Frame = +2

Query: 50  LPAATNDVEVLTQETIEIFKKIN 118
           +PA+T+DV  +  + + IFK+++
Sbjct: 314 VPASTSDVSGMVAQALSIFKQVS 336


>SPBC336.01 |fbh1|fdh1, fdh|DNA helicase I|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 878

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = -3

Query: 483 GFLNGVSLASTPDLLMARFFSFCSKVSALGGLP 385
           GF+NG  ++STP      ++S   ++  + GLP
Sbjct: 83  GFVNGTQISSTP--AEREYYSKSDEIKNICGLP 113


>SPBC365.08c |||Der1-like |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 224

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -2

Query: 157 YLYSNTSHFFSIYIYFFKYLNSFL 86
           YLY+ T   F + IYFF   +++L
Sbjct: 64  YLYAGTGFDFIMNIYFFYQYSTYL 87


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,670,868
Number of Sequences: 5004
Number of extensions: 26070
Number of successful extensions: 103
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)