Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS319D10f
(521 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC130411-1|AAI30412.1| 1250|Homo sapiens REV1 homolog (S. cerevi... 47 5e-05
AJ131720-1|CAB38231.1| 774|Homo sapiens alpha integrin binding ... 47 5e-05
AF357886-1|AAK43708.1| 1251|Homo sapiens terminal deoxycytidyl t... 47 5e-05
AF206019-1|AAF18986.1| 1251|Homo sapiens REV1 protein protein. 47 5e-05
AF151538-1|AAF06731.1| 1251|Homo sapiens deoxycytidyl transferas... 47 5e-05
AC018690-2|AAY24314.1| 1251|Homo sapiens unknown protein. 47 5e-05
AB047646-1|BAB21441.1| 1250|Homo sapiens Rev1S protein. 47 5e-05
BC037734-1|AAH37734.1| 1114|Homo sapiens REV1 protein protein. 45 2e-04
X86373-1|CAA60132.1| 504|Homo sapiens SRP 54 protein. 30 5.7
U51920-1|AAC50994.1| 504|Homo sapiens signal recognition partic... 30 5.7
BC003389-1|AAH03389.1| 504|Homo sapiens signal recognition part... 30 5.7
BC000652-1|AAH00652.1| 504|Homo sapiens signal recognition part... 30 5.7
>BC130411-1|AAI30412.1| 1250|Homo sapiens REV1 homolog (S.
cerevisiae) protein.
Length = 1250
Score = 46.8 bits (106), Expect = 5e-05
Identities = 20/56 (35%), Positives = 36/56 (64%)
Frame = +2
Query: 2 KFMGHGYCNVINKSNNLPAATNDVEVLTQETIEIFKKINVDAKEMRGVGIQVTKLV 169
KF GHG C+ I ++ L AT++ +++ + + +F + ++ +MRGVGI V +LV
Sbjct: 769 KFGGHGICDNIARTVTLDQATDNAKIIGKAMLNMFHTMKLNISDMRGVGIHVNQLV 824
>AJ131720-1|CAB38231.1| 774|Homo sapiens alpha integrin binding
protein 80 protein.
Length = 774
Score = 46.8 bits (106), Expect = 5e-05
Identities = 20/56 (35%), Positives = 36/56 (64%)
Frame = +2
Query: 2 KFMGHGYCNVINKSNNLPAATNDVEVLTQETIEIFKKINVDAKEMRGVGIQVTKLV 169
KF GHG C+ I ++ L AT++ +++ + + +F + ++ +MRGVGI V +LV
Sbjct: 293 KFGGHGICDNIARTVTLDQATDNAKIIGKAMLNMFHTMKLNISDMRGVGIHVNQLV 348
>AF357886-1|AAK43708.1| 1251|Homo sapiens terminal deoxycytidyl
transferase protein.
Length = 1251
Score = 46.8 bits (106), Expect = 5e-05
Identities = 20/56 (35%), Positives = 36/56 (64%)
Frame = +2
Query: 2 KFMGHGYCNVINKSNNLPAATNDVEVLTQETIEIFKKINVDAKEMRGVGIQVTKLV 169
KF GHG C+ I ++ L AT++ +++ + + +F + ++ +MRGVGI V +LV
Sbjct: 770 KFGGHGICDNIARTVTLDQATDNAKIIGKAMLNMFHTMKLNISDMRGVGIHVNQLV 825
>AF206019-1|AAF18986.1| 1251|Homo sapiens REV1 protein protein.
Length = 1251
Score = 46.8 bits (106), Expect = 5e-05
Identities = 20/56 (35%), Positives = 36/56 (64%)
Frame = +2
Query: 2 KFMGHGYCNVINKSNNLPAATNDVEVLTQETIEIFKKINVDAKEMRGVGIQVTKLV 169
KF GHG C+ I ++ L AT++ +++ + + +F + ++ +MRGVGI V +LV
Sbjct: 770 KFGGHGICDNIARTVTLDQATDNAKIIGKAMLNMFHTMKLNISDMRGVGIHVNQLV 825
>AF151538-1|AAF06731.1| 1251|Homo sapiens deoxycytidyl transferase
protein.
Length = 1251
Score = 46.8 bits (106), Expect = 5e-05
Identities = 20/56 (35%), Positives = 36/56 (64%)
Frame = +2
Query: 2 KFMGHGYCNVINKSNNLPAATNDVEVLTQETIEIFKKINVDAKEMRGVGIQVTKLV 169
KF GHG C+ I ++ L AT++ +++ + + +F + ++ +MRGVGI V +LV
Sbjct: 770 KFGGHGICDNIARTVTLDQATDNAKIIGKAMLNMFHTMKLNISDMRGVGIHVNQLV 825
>AC018690-2|AAY24314.1| 1251|Homo sapiens unknown protein.
Length = 1251
Score = 46.8 bits (106), Expect = 5e-05
Identities = 20/56 (35%), Positives = 36/56 (64%)
Frame = +2
Query: 2 KFMGHGYCNVINKSNNLPAATNDVEVLTQETIEIFKKINVDAKEMRGVGIQVTKLV 169
KF GHG C+ I ++ L AT++ +++ + + +F + ++ +MRGVGI V +LV
Sbjct: 770 KFGGHGICDNIARTVTLDQATDNAKIIGKAMLNMFHTMKLNISDMRGVGIHVNQLV 825
>AB047646-1|BAB21441.1| 1250|Homo sapiens Rev1S protein.
Length = 1250
Score = 46.8 bits (106), Expect = 5e-05
Identities = 20/56 (35%), Positives = 36/56 (64%)
Frame = +2
Query: 2 KFMGHGYCNVINKSNNLPAATNDVEVLTQETIEIFKKINVDAKEMRGVGIQVTKLV 169
KF GHG C+ I ++ L AT++ +++ + + +F + ++ +MRGVGI V +LV
Sbjct: 769 KFGGHGICDNIARTVTLDQATDNAKIIGKAMLNMFHTMKLNISDMRGVGIHVNQLV 824
>BC037734-1|AAH37734.1| 1114|Homo sapiens REV1 protein protein.
Length = 1114
Score = 44.8 bits (101), Expect = 2e-04
Identities = 19/56 (33%), Positives = 35/56 (62%)
Frame = +2
Query: 2 KFMGHGYCNVINKSNNLPAATNDVEVLTQETIEIFKKINVDAKEMRGVGIQVTKLV 169
KF GHG C+ I ++ L AT++ +++ + + +F + ++ +MRGVG V +LV
Sbjct: 698 KFGGHGICDNIARTVTLDQATDNAKIIGKAMLNMFHTMKLNISDMRGVGTHVNQLV 753
>X86373-1|CAA60132.1| 504|Homo sapiens SRP 54 protein.
Length = 504
Score = 29.9 bits (64), Expect = 5.7
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = -3
Query: 474 NGVSLASTPDLLMARFFSFCSKVSALGGLPRLFPGGDLVLSV 349
+GVS +LL ++ F V +GG+ LF GGD+ +V
Sbjct: 410 SGVSTRDVQELL-TQYTKFAQMVKKMGGIKGLFKGGDMSKNV 450
>U51920-1|AAC50994.1| 504|Homo sapiens signal recognition particle
protein.
Length = 504
Score = 29.9 bits (64), Expect = 5.7
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = -3
Query: 474 NGVSLASTPDLLMARFFSFCSKVSALGGLPRLFPGGDLVLSV 349
+GVS +LL ++ F V +GG+ LF GGD+ +V
Sbjct: 410 SGVSTRDVQELL-TQYTKFAQMVKKMGGIKGLFKGGDMSKNV 450
>BC003389-1|AAH03389.1| 504|Homo sapiens signal recognition
particle 54kDa protein.
Length = 504
Score = 29.9 bits (64), Expect = 5.7
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = -3
Query: 474 NGVSLASTPDLLMARFFSFCSKVSALGGLPRLFPGGDLVLSV 349
+GVS +LL ++ F V +GG+ LF GGD+ +V
Sbjct: 410 SGVSTRDVQELL-TQYTKFAQMVKKMGGIKGLFKGGDMSKNV 450
>BC000652-1|AAH00652.1| 504|Homo sapiens signal recognition
particle 54kDa protein.
Length = 504
Score = 29.9 bits (64), Expect = 5.7
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = -3
Query: 474 NGVSLASTPDLLMARFFSFCSKVSALGGLPRLFPGGDLVLSV 349
+GVS +LL ++ F V +GG+ LF GGD+ +V
Sbjct: 410 SGVSTRDVQELL-TQYTKFAQMVKKMGGIKGLFKGGDMSKNV 450
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 56,092,520
Number of Sequences: 237096
Number of extensions: 877646
Number of successful extensions: 1933
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1898
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1933
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4990119376
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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