Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS319D10f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z46812-2|CAA86844.1| 1027|Caenorhabditis elegans Hypothetical pr...    56   2e-08
AF000191-1|AAB52884.1|  533|Caenorhabditis elegans Hypothetical ...    29   1.5  
AC006762-6|ABJ99063.1|  547|Caenorhabditis elegans Hypothetical ...    28   3.5  
AC006762-5|AAF60553.2|  684|Caenorhabditis elegans Hypothetical ...    28   3.5  
U64847-6|AAB04875.1|  380|Caenorhabditis elegans Hypothetical pr...    27   8.1  
AC024799-1|AAK72316.1|  349|Caenorhabditis elegans Serpentine re...    27   8.1  

>Z46812-2|CAA86844.1| 1027|Caenorhabditis elegans Hypothetical
           protein ZK675.2 protein.
          Length = 1027

 Score = 56.0 bits (129), Expect = 2e-08
 Identities = 26/82 (31%), Positives = 45/82 (54%)
 Frame = +2

Query: 2   KFMGHGYCNVINKSNNLPAATNDVEVLTQETIEIFKKINVDAKEMRGVGIQVTKLVLIIK 181
           KFMGHG C+   K+ NL   T   E LT E ++++ K++   +++RGVG+   KL   +K
Sbjct: 748 KFMGHGICDTFTKTCNLNVPTTRGESLTSEAMKLYAKVSPKVEDLRGVGVTCGKLKSKLK 807

Query: 182 QQSKGAISKFLCNKPTIINIKR 247
           + +  A+ +       + N+ R
Sbjct: 808 KDAATAVQEMFGKTSRVGNMAR 829


>AF000191-1|AAB52884.1|  533|Caenorhabditis elegans Hypothetical
           protein T23C6.3 protein.
          Length = 533

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 10/37 (27%), Positives = 24/37 (64%)
 Frame = +1

Query: 409 FRTKRKKTCHK*IRSRSQRYTIQESNDETTKFTQRNK 519
           F  +++++CHK     S+ +  +ES+  + ++T+RN+
Sbjct: 51  FNPRKQRSCHKRAEPVSEEHRKKESSKNSREYTKRNR 87


>AC006762-6|ABJ99063.1|  547|Caenorhabditis elegans Hypothetical
           protein Y42G9A.6b protein.
          Length = 547

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 16/55 (29%), Positives = 32/55 (58%), Gaps = 6/55 (10%)
 Frame = -3

Query: 258 VLDSLLIFMIVGLLQRNLLMA--PLLCCLIISTNF-VTCIP---TPLISLASTFI 112
           ++DS LI+M+VG+L +N+ ++   +  C+  + N  V  +P    P+++    FI
Sbjct: 399 IIDSFLIYMLVGILVQNIAISIGYMFSCIFGTVNLAVAVMPIFVVPMMAFGGFFI 453


>AC006762-5|AAF60553.2|  684|Caenorhabditis elegans Hypothetical
           protein Y42G9A.6a protein.
          Length = 684

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 16/55 (29%), Positives = 32/55 (58%), Gaps = 6/55 (10%)
 Frame = -3

Query: 258 VLDSLLIFMIVGLLQRNLLMA--PLLCCLIISTNF-VTCIP---TPLISLASTFI 112
           ++DS LI+M+VG+L +N+ ++   +  C+  + N  V  +P    P+++    FI
Sbjct: 536 IIDSFLIYMLVGILVQNIAISIGYMFSCIFGTVNLAVAVMPIFVVPMMAFGGFFI 590


>U64847-6|AAB04875.1|  380|Caenorhabditis elegans Hypothetical
           protein F08F3.8 protein.
          Length = 380

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 10/41 (24%), Positives = 24/41 (58%)
 Frame = +2

Query: 62  TNDVEVLTQETIEIFKKINVDAKEMRGVGIQVTKLVLIIKQ 184
           T +++ +T   +  +  +  DAK+++GVGI  T  +  +++
Sbjct: 120 TKNLKPVTSTNLSDYSSVFTDAKKVKGVGIDWTATIASVEK 160


>AC024799-1|AAK72316.1|  349|Caenorhabditis elegans Serpentine
           receptor, class x protein4 protein.
          Length = 349

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = -3

Query: 510 LSEFCGFIIGFLNGVSLASTPDLLMARF-FSFCSK 409
           L  F GF+ G L+G+SL      ++A F  +FC +
Sbjct: 5   LKPFLGFLFGLLSGISLILNLITIIAVFRLAFCKR 39


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,051,407
Number of Sequences: 27780
Number of extensions: 142691
Number of successful extensions: 504
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 487
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 504
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)