Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS319D06f
(521 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U93867-1|AAB63675.1| 533|Homo sapiens RNA polymerase III subuni... 30 5.7
BC036050-1|AAH36050.1| 715|Homo sapiens coiled-coil domain cont... 29 9.9
BC031482-1|AAH31482.1| 989|Homo sapiens C10orf12 protein protein. 29 9.9
BC024315-1|AAH24315.1| 1247|Homo sapiens chromosome 10 open read... 29 9.9
AY004227-1|AAF93173.1| 2149|Homo sapiens betaIV spectrin isoform... 29 9.9
AY004226-2|AAF93172.1| 1307|Homo sapiens betaIV spectrin isoform... 29 9.9
AL442123-2|CAH70916.1| 1247|Homo sapiens chromosome 10 open read... 29 9.9
AK058196-1|BAB71711.1| 276|Homo sapiens protein ( Homo sapiens ... 29 9.9
AK023084-1|BAB14396.1| 914|Homo sapiens protein ( Homo sapiens ... 29 9.9
AF324063-1|AAQ14860.1| 2564|Homo sapiens non-erythrocytic beta-s... 29 9.9
AF311855-1|AAG42473.1| 2564|Homo sapiens spectrin beta IV protein. 29 9.9
AF082075-1|AAG38874.1| 2559|Homo sapiens beta4sigma1 spectrin pr... 29 9.9
AB046862-1|BAB13468.1| 1997|Homo sapiens KIAA1642 protein protein. 29 9.9
>U93867-1|AAB63675.1| 533|Homo sapiens RNA polymerase III subunit
protein.
Length = 533
Score = 29.9 bits (64), Expect = 5.7
Identities = 15/41 (36%), Positives = 25/41 (60%)
Frame = +1
Query: 124 VSNSRELNLIDGVSLIGQGSPRSARSFEPLPDEPRARENQV 246
V N +++ L+ +SLIG+G R + S E EP+AR+ +
Sbjct: 181 VINEKDMYLVPKLSLIGKGKRRRS-SDEDAAGEPKARDQNI 220
>BC036050-1|AAH36050.1| 715|Homo sapiens coiled-coil domain
containing 13 protein.
Length = 715
Score = 29.1 bits (62), Expect = 9.9
Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
Frame = +1
Query: 94 KEKALRYVENVSNSRE-LNLIDGVSLIGQGSPRSARSFEP--LPDEPRARENQV 246
+EK L + E L + DG+SL+ G P S SFE L DE N++
Sbjct: 34 REKELSLKSRADDQEEPLEVSDGLSLLHAGEPNSKNSFEKRVLEDEIEHLRNEL 87
>BC031482-1|AAH31482.1| 989|Homo sapiens C10orf12 protein protein.
Length = 989
Score = 29.1 bits (62), Expect = 9.9
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = +2
Query: 173 VKAPLDQPGPSSLYPTSPEPGRIK 244
VK PL + PSSLYP+S + R+K
Sbjct: 737 VKHPLQKYAPSSLYPSSLQAERLK 760
>BC024315-1|AAH24315.1| 1247|Homo sapiens chromosome 10 open reading
frame 12 protein.
Length = 1247
Score = 29.1 bits (62), Expect = 9.9
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = +2
Query: 173 VKAPLDQPGPSSLYPTSPEPGRIK 244
VK PL + PSSLYP+S + R+K
Sbjct: 903 VKHPLQKYAPSSLYPSSLQAERLK 926
>AY004227-1|AAF93173.1| 2149|Homo sapiens betaIV spectrin isoform
sigma4 protein.
Length = 2149
Score = 29.1 bits (62), Expect = 9.9
Identities = 23/88 (26%), Positives = 43/88 (48%), Gaps = 2/88 (2%)
Frame = +1
Query: 1 AVAAANSDEDVFRSVMGVLKTCSDDNVALCLKEKALRYVENVSNSRELNLIDGV-SLIGQ 177
A A A+ +++V + +L C D + + ALR+ V + L+ +DG+ S IG
Sbjct: 1905 AEAIASREQEVLQGWKELLSACEDARLHVSSTADALRFHSQVRDL--LSWMDGIASQIGA 1962
Query: 178 G-SPRSARSFEPLPDEPRARENQVDLRL 258
PR S E L + + + +++ R+
Sbjct: 1963 ADKPRDVSSVEVLMNYHQGLKTELEARV 1990
>AY004226-2|AAF93172.1| 1307|Homo sapiens betaIV spectrin isoform
sigma3 protein.
Length = 1307
Score = 29.1 bits (62), Expect = 9.9
Identities = 23/88 (26%), Positives = 43/88 (48%), Gaps = 2/88 (2%)
Frame = +1
Query: 1 AVAAANSDEDVFRSVMGVLKTCSDDNVALCLKEKALRYVENVSNSRELNLIDGV-SLIGQ 177
A A A+ +++V + +L C D + + ALR+ V + L+ +DG+ S IG
Sbjct: 653 AEAIASREQEVLQGWKELLSACEDARLHVSSTADALRFHSQVRDL--LSWMDGIASQIGA 710
Query: 178 G-SPRSARSFEPLPDEPRARENQVDLRL 258
PR S E L + + + +++ R+
Sbjct: 711 ADKPRDVSSVEVLMNYHQGLKTELEARV 738
>AL442123-2|CAH70916.1| 1247|Homo sapiens chromosome 10 open reading
frame 12 protein.
Length = 1247
Score = 29.1 bits (62), Expect = 9.9
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = +2
Query: 173 VKAPLDQPGPSSLYPTSPEPGRIK 244
VK PL + PSSLYP+S + R+K
Sbjct: 903 VKHPLQKYAPSSLYPSSLQAERLK 926
>AK058196-1|BAB71711.1| 276|Homo sapiens protein ( Homo sapiens
cDNA FLJ25467 fis, clone TST09387. ).
Length = 276
Score = 29.1 bits (62), Expect = 9.9
Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
Frame = +1
Query: 94 KEKALRYVENVSNSRE-LNLIDGVSLIGQGSPRSARSFEP--LPDEPRARENQV 246
+EK L + E L + DG+SL+ G P S SFE L DE N++
Sbjct: 34 REKELSLKSRADDQEEPLEVSDGLSLLHAGEPNSKNSFEKRVLEDEIEHLRNEL 87
>AK023084-1|BAB14396.1| 914|Homo sapiens protein ( Homo sapiens
cDNA FLJ13022 fis, clone NT2RP3000753, weakly similar to
NEUROFILAMENT TRIPLET H PROTEIN. ).
Length = 914
Score = 29.1 bits (62), Expect = 9.9
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = +2
Query: 173 VKAPLDQPGPSSLYPTSPEPGRIK 244
VK PL + PSSLYP+S + R+K
Sbjct: 570 VKHPLQKYAPSSLYPSSLQAERLK 593
>AF324063-1|AAQ14860.1| 2564|Homo sapiens non-erythrocytic
beta-spectrin 4 protein.
Length = 2564
Score = 29.1 bits (62), Expect = 9.9
Identities = 23/88 (26%), Positives = 43/88 (48%), Gaps = 2/88 (2%)
Frame = +1
Query: 1 AVAAANSDEDVFRSVMGVLKTCSDDNVALCLKEKALRYVENVSNSRELNLIDGV-SLIGQ 177
A A A+ +++V + +L C D + + ALR+ V + L+ +DG+ S IG
Sbjct: 1910 AEAIASREQEVLQGWKELLSACEDARLHVSSTADALRFHSQVRDL--LSWMDGIASQIGA 1967
Query: 178 G-SPRSARSFEPLPDEPRARENQVDLRL 258
PR S E L + + + +++ R+
Sbjct: 1968 ADKPRDVSSVEVLMNYHQGLKTELEARV 1995
>AF311855-1|AAG42473.1| 2564|Homo sapiens spectrin beta IV protein.
Length = 2564
Score = 29.1 bits (62), Expect = 9.9
Identities = 23/88 (26%), Positives = 43/88 (48%), Gaps = 2/88 (2%)
Frame = +1
Query: 1 AVAAANSDEDVFRSVMGVLKTCSDDNVALCLKEKALRYVENVSNSRELNLIDGV-SLIGQ 177
A A A+ +++V + +L C D + + ALR+ V + L+ +DG+ S IG
Sbjct: 1910 AEAIASREQEVLQGWKELLSACEDARLHVSSTADALRFHSQVRDL--LSWMDGIASQIGA 1967
Query: 178 G-SPRSARSFEPLPDEPRARENQVDLRL 258
PR S E L + + + +++ R+
Sbjct: 1968 ADKPRDVSSVEVLMNYHQGLKTELEARV 1995
>AF082075-1|AAG38874.1| 2559|Homo sapiens beta4sigma1 spectrin
protein.
Length = 2559
Score = 29.1 bits (62), Expect = 9.9
Identities = 23/88 (26%), Positives = 43/88 (48%), Gaps = 2/88 (2%)
Frame = +1
Query: 1 AVAAANSDEDVFRSVMGVLKTCSDDNVALCLKEKALRYVENVSNSRELNLIDGV-SLIGQ 177
A A A+ +++V + +L C D + + ALR+ V + L+ +DG+ S IG
Sbjct: 1905 AEAIASREQEVLQGWKELLSACEDARLHVSSTADALRFHSQVRDL--LSWMDGIASQIGA 1962
Query: 178 G-SPRSARSFEPLPDEPRARENQVDLRL 258
PR S E L + + + +++ R+
Sbjct: 1963 ADKPRDVSSVEVLMNYHQGLKTELEARV 1990
>AB046862-1|BAB13468.1| 1997|Homo sapiens KIAA1642 protein protein.
Length = 1997
Score = 29.1 bits (62), Expect = 9.9
Identities = 23/88 (26%), Positives = 43/88 (48%), Gaps = 2/88 (2%)
Frame = +1
Query: 1 AVAAANSDEDVFRSVMGVLKTCSDDNVALCLKEKALRYVENVSNSRELNLIDGV-SLIGQ 177
A A A+ +++V + +L C D + + ALR+ V + L+ +DG+ S IG
Sbjct: 1525 AEAIASREQEVLQGWKELLSACEDARLHVSSTADALRFHSQVRDL--LSWMDGIASQIGA 1582
Query: 178 G-SPRSARSFEPLPDEPRARENQVDLRL 258
PR S E L + + + +++ R+
Sbjct: 1583 ADKPRDVSSVEVLMNYHQGLKTELEARV 1610
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 69,906,746
Number of Sequences: 237096
Number of extensions: 1537028
Number of successful extensions: 4408
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 4149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4408
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4990119376
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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