Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS319D05f
         (447 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0016 + 110796-110979,111252-111768,111847-112213                 27   6.9  
10_08_0553 - 18720436-18720494,18721102-18721106,18721136-187212...    27   9.1  
04_04_0613 + 26617677-26617963,26618726-26618786,26619598-266198...    27   9.1  
04_03_0178 + 12298502-12298878,12298896-12298998,12299211-122992...    27   9.1  
02_05_0096 + 25785995-25786311,25786716-25786776,25787825-257880...    27   9.1  
02_02_0535 - 11292509-11294679,11294971-11295040,11295268-112953...    27   9.1  
02_02_0529 - 11208973-11211143,11211703-11211772,11211993-112120...    27   9.1  

>02_01_0016 + 110796-110979,111252-111768,111847-112213
          Length = 355

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +1

Query: 181 ETMKEVKDASKNLMGGDFERQYGGPTMNKCDRRM 282
           E+   V++ + N  GG   R  G P MN+C  R+
Sbjct: 73  ESPVTVRECNTNWFGGFSVRMEGTPEMNRCTARV 106


>10_08_0553 -
           18720436-18720494,18721102-18721106,18721136-18721257,
           18721390-18721478,18722136-18722316,18722403-18722654,
           18722755-18722993,18723680-18723914,18724072-18724132,
           18724632-18724987
          Length = 532

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = -1

Query: 255 RASVLPLKITTHQVLGRILHFLHGFLLRVHRNRVWYE 145
           R  +L  KIT    LG    ++H  +L+ HRNRV+++
Sbjct: 396 RVELLAKKITE---LGYSCFYIHAKMLQDHRNRVFHD 429


>04_04_0613 +
           26617677-26617963,26618726-26618786,26619598-26619832,
           26619958-26620196,26620493-26620744,26620844-26621024,
           26621810-26621898,26622200-26622273,26622365-26622443
          Length = 498

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = -1

Query: 255 RASVLPLKITTHQVLGRILHFLHGFLLRVHRNRVWYE 145
           R  +L  KIT    LG    ++H  +L+ HRNRV+++
Sbjct: 373 RVELLAKKITE---LGYSCFYIHAKMLQDHRNRVFHD 406


>04_03_0178 +
           12298502-12298878,12298896-12298998,12299211-12299271,
           12299423-12299486,12299825-12299996,12300765-12300863
          Length = 291

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
 Frame = -2

Query: 395 SSISLRKRAMWISLTITRXSNANSSPMIVAVTVTTQ---AFIRRSHLFXVGPPYCL 237
           SS+S  + A W  +T        +   +V  T   +   A++  S LF VGP +C+
Sbjct: 173 SSVSCYELASWNKITAWETKPCITEAAVVTATCQNKQRSAYLLGSVLFRVGPIHCV 228


>02_05_0096 +
           25785995-25786311,25786716-25786776,25787825-25788059,
           25788292-25788530,25789700-25789951,25790043-25790223,
           25790864-25790952,25791269-25791342,25791481-25791584,
           25791919-25791957,25792324-25792436
          Length = 567

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = -1

Query: 255 RASVLPLKITTHQVLGRILHFLHGFLLRVHRNRVWYE 145
           R  +L  KIT    LG    ++H  +L+ HRNRV+++
Sbjct: 383 RVELLAKKITE---LGYSCFYIHAKMLQDHRNRVFHD 416


>02_02_0535 -
           11292509-11294679,11294971-11295040,11295268-11295324,
           11298629-11298789,11299123-11299156
          Length = 830

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = -2

Query: 185 VSFCVYIVIGSGMSACFSAITVLTLHP 105
           VS CV  +  SG+SAC +AI   +L P
Sbjct: 663 VSTCVVRLELSGLSACLAAIVCSSLQP 689


>02_02_0529 -
           11208973-11211143,11211703-11211772,11211993-11212049,
           11212769-11212819,11213112-11213264,11216095-11216255,
           11216609-11216642
          Length = 898

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = -2

Query: 185 VSFCVYIVIGSGMSACFSAITVLTLHP 105
           VS CV  +  SG+SAC +AI   +L P
Sbjct: 731 VSTCVVRLELSGLSACLAAIVCSSLQP 757


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,988,722
Number of Sequences: 37544
Number of extensions: 241735
Number of successful extensions: 677
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 667
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 677
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 859680288
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)