Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS319D02f
         (442 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U39996-7|AAA81093.1| 1667|Caenorhabditis elegans Temporarily ass...    27   4.6  
AC091125-1|AAK27889.2|  313|Caenorhabditis elegans Hypothetical ...    27   6.0  

>U39996-7|AAA81093.1| 1667|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 177 protein.
          Length = 1667

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 14/47 (29%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
 Frame = -3

Query: 326 HTVSR-IHFYKCACFRCSKLIQKLACVVLAVIIGSKLNKNSHHTILI 189
           H VSR ++     CF+ +KL+  L    ++ II S+LN++    + +
Sbjct: 197 HLVSRRLNINSIGCFKINKLMTDLGLFPVSDIICSRLNRSQWQRVKV 243


>AC091125-1|AAK27889.2|  313|Caenorhabditis elegans Hypothetical
           protein Y67D2.4 protein.
          Length = 313

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
 Frame = +2

Query: 131 HVYFIRK*ISV*QKCCVIDRSKW---YDDYFY 217
           H+Y IR  I V  KC +ID  K+    +DY+Y
Sbjct: 40  HLYAIRPHILVLNKCDLIDMKKYKHQIEDYYY 71


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,512,973
Number of Sequences: 27780
Number of extensions: 156033
Number of successful extensions: 245
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 245
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 245
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 756625558
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)