Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS319D01f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    26   0.20 
EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor 1-a...    25   0.36 
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...    25   0.36 
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    25   0.36 
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     24   0.82 
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    22   4.4  
AB201717-1|BAD90662.1|  107|Apis mellifera apime-corazonin prepr...    22   4.4  

>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 26.2 bits (55), Expect = 0.20
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +1

Query: 187 LWHPEGVKEFVNVITYKGHRNFV 255
           LW  E  K +V +I   GHR+F+
Sbjct: 77  LWKFETAKYYVTIIDAPGHRDFI 99


>EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor
           1-alpha protein.
          Length = 172

 Score = 25.4 bits (53), Expect = 0.36
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +1

Query: 187 LWHPEGVKEFVNVITYKGHRNFV 255
           LW  E  K +V +I   GHR+F+
Sbjct: 4   LWKFETSKYYVTIIDAPGHRDFI 26


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score = 25.4 bits (53), Expect = 0.36
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +1

Query: 187 LWHPEGVKEFVNVITYKGHRNFV 255
           LW  E  K +V +I   GHR+F+
Sbjct: 20  LWKFETSKYYVTIIDAPGHRDFI 42


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 25.4 bits (53), Expect = 0.36
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +1

Query: 187 LWHPEGVKEFVNVITYKGHRNFV 255
           LW  E  K +V +I   GHR+F+
Sbjct: 77  LWKFETSKYYVTIIDAPGHRDFI 99


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 24.2 bits (50), Expect = 0.82
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +2

Query: 149 SAYCPLQETEQQNFGIP 199
           SAY PL+E    ++G+P
Sbjct: 195 SAYTPLKEDHDDHYGVP 211


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = -2

Query: 451 YPNLNSIKSQNPCQVRHYKRRSRVLLASRELSH 353
           +P  +  KS   CQ+ + + RSR L+ +  L++
Sbjct: 68  FPRSHRFKSLPRCQLSNKRDRSRELIKAAILAN 100


>AB201717-1|BAD90662.1|  107|Apis mellifera apime-corazonin
           preprohormone protein.
          Length = 107

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 7/20 (35%), Positives = 14/20 (70%)
 Frame = -2

Query: 445 NLNSIKSQNPCQVRHYKRRS 386
           N+N+   Q PC++ ++ +RS
Sbjct: 69  NINNQLFQTPCELLNFPKRS 88


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 162,579
Number of Sequences: 438
Number of extensions: 3521
Number of successful extensions: 10
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)