Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS319C05f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma su...    30   0.24 
SPCP31B10.05 |||tyrosyl-DNA phosphodiesterase |Schizosaccharomyc...    25   9.0  

>SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 446

 Score = 29.9 bits (64), Expect = 0.24
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = +1

Query: 94  FPVDIDHICFISLQFRTFRIYFCDHSYCPVVGCFGQSSSDGRD 222
           F  +++    I L +   +IY C +  CP  GC+   SS+  D
Sbjct: 51  FKNELERNITIKLGYANAKIYKCSNEECPRPGCYRSYSSNKED 93


>SPCP31B10.05 |||tyrosyl-DNA phosphodiesterase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 536

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -2

Query: 190 ILRPDSKNDHKNRFEMSEI 134
           +L  DSK D K +FE S+I
Sbjct: 290 MLEKDSKKDEKTKFEESDI 308


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,070,963
Number of Sequences: 5004
Number of extensions: 40427
Number of successful extensions: 73
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 73
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)