Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS319C02f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit ... 105 3e-24
SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit... 71 1e-13
SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit ... 69 6e-13
SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subuni... 58 8e-10
SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit C... 55 6e-09
SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit... 42 4e-05
SPBC16H5.11c |skb1|rmt5|type II protein arginine N-methyltransfe... 30 0.24
SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit C... 29 0.32
SPBC119.10 |asn1||asparagine synthetase|Schizosaccharomyces pomb... 29 0.56
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ... 26 3.0
SPBC23G7.08c |rga7||GTPase activating protein Rga7|Schizosacchar... 26 3.9
SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein Hsp60... 25 5.2
SPCC330.06c |||thioredoxin peroxidase|Schizosaccharomyces pombe|... 25 6.8
SPAC16C9.06c |upf1||ATP-dependent RNA helicase Upf1|Schizosaccha... 25 6.8
SPAP27G11.12 |||human down-regulated in multiple cancers-1 homol... 25 9.0
SPAC1486.06 |||nicotinate phosphoribosyltransferase |Schizosacch... 25 9.0
>SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit
Cct7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 558
Score = 105 bits (253), Expect = 3e-24
Identities = 54/100 (54%), Positives = 65/100 (65%)
Frame = -1
Query: 518 HSLQLAGKEQLXXXXXXXXXXAIPRQLADNAGLDGTGLLNKLRQKHAAGEHTHGVDVISG 339
+SL ++GK+Q IPRQL DNAG D T +LNKLR +HA GE GVD+ S
Sbjct: 428 YSLTISGKQQNFIAAFARSLEVIPRQLCDNAGFDSTNILNKLRMQHAKGEMWAGVDMDSE 487
Query: 338 EVVDNFAKCVWEPALVKLNAVSAACEATAQILSVDETIKN 219
V +NF K VWEP+ VK NA+ +A EA ILSVDETIKN
Sbjct: 488 GVANNFEKFVWEPSTVKSNAILSATEAATLILSVDETIKN 527
>SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit
Cct3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 528
Score = 70.9 bits (166), Expect = 1e-13
Identities = 34/84 (40%), Positives = 47/84 (55%)
Frame = -1
Query: 452 IPRQLADNAGLDGTGLLNKLRQKHAAGEHTHGVDVISGEVVDNFAKCVWEPALVKLNAVS 273
IPR L N G + L +LR KHA G+H+ G+D +G VVD VWEP VKL ++
Sbjct: 445 IPRTLVQNCGANPIKALTELRAKHAEGQHSFGIDGETGRVVDMHEYGVWEPEAVKLQSIK 504
Query: 272 AACEATAQILSVDETIKNVKGGEE 201
A E+ +L VD+ + V+ E
Sbjct: 505 TAIESACLLLRVDDIVSGVRKHSE 528
>SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit
Cct4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 527
Score = 68.5 bits (160), Expect = 6e-13
Identities = 34/96 (35%), Positives = 54/96 (56%)
Frame = -1
Query: 518 HSLQLAGKEQLXXXXXXXXXXAIPRQLADNAGLDGTGLLNKLRQKHAAGEHTHGVDVISG 339
H+ QL G+E + IP LA+NAGL+ ++ +LR +HA GE T G++V G
Sbjct: 427 HARQLEGREAICIRAFSEALEIIPVTLAENAGLNAIQVVTELRSRHANGEKTAGINVRKG 486
Query: 338 EVVDNFAKCVWEPALVKLNAVSAACEATAQILSVDE 231
V + + V +P LV ++A+ A E T I+ +D+
Sbjct: 487 IVTNILEENVLQPLLVNISAIQLAAETTKMIMKIDD 522
>SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subunit
Cct1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 556
Score = 58.0 bits (134), Expect = 8e-10
Identities = 38/107 (35%), Positives = 54/107 (50%), Gaps = 12/107 (11%)
Frame = -1
Query: 506 LAGKEQLXXXXXXXXXXAIPRQLADNAGLDGTGLLNKLRQKHAAGEHT------------ 363
L +EQL IPR LA NA D T L KLR HAA ++
Sbjct: 435 LGSREQLAIAEFAQALLIIPRTLAVNAAKDSTELTAKLRAYHAASQNAEVTDVKKRGYKN 494
Query: 362 HGVDVISGEVVDNFAKCVWEPALVKLNAVSAACEATAQILSVDETIK 222
+G+D+++G + DN V EP++ KL ++ +A EA IL +D +IK
Sbjct: 495 YGLDLLNGVIRDNVKAGVLEPSMSKLKSLKSAVEACIAILRIDTSIK 541
>SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit
Cct2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 55.2 bits (127), Expect = 6e-09
Identities = 31/93 (33%), Positives = 46/93 (49%)
Frame = -1
Query: 500 GKEQLXXXXXXXXXXAIPRQLADNAGLDGTGLLNKLRQKHAAGEHTHGVDVISGEVVDNF 321
GK+ + +P LADNAG D + L+ +L+ H G T G+D+ GE+ D
Sbjct: 426 GKKAVAVSAFAKALSQLPTILADNAGFDSSELVAQLKAAHYDGNDTMGLDMDEGEIADMR 485
Query: 320 AKCVWEPALVKLNAVSAACEATAQILSVDETIK 222
AK + E +K VS+ E +L VD +K
Sbjct: 486 AKGILEALKLKQAVVSSGSEGAQLLLRVDTILK 518
>SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit
Cct8 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 546
Score = 42.3 bits (95), Expect = 4e-05
Identities = 25/85 (29%), Positives = 45/85 (52%), Gaps = 3/85 (3%)
Frame = -1
Query: 452 IPRQLADNAGLDGTGLLNKL-RQKHAAGEHTHGVDV--ISGEVVDNFAKCVWEPALVKLN 282
+PR +++NAGLD T +++KL H + GVDV + +D +++ L K +
Sbjct: 448 VPRTISENAGLDPTDVISKLYAAHHKENGESIGVDVECENDGTLDAKEAGIFDVLLAKKS 507
Query: 281 AVSAACEATAQILSVDETIKNVKGG 207
A+ A E +L+VD+ + + G
Sbjct: 508 AIRLATETVLTVLNVDQVVMSKPAG 532
>SPBC16H5.11c |skb1|rmt5|type II protein arginine
N-methyltransferase Skb1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 645
Score = 29.9 bits (64), Expect = 0.24
Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 3/33 (9%)
Frame = -2
Query: 340 ERW--WITLRSACGSRPSSSLTP*VPPA-RPPL 251
E W W T+RSACG P + +PPA PP+
Sbjct: 174 ETWKMWDTIRSACGYHPRLKVALELPPACSPPI 206
>SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit
Cct6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 29.5 bits (63), Expect = 0.32
Identities = 19/96 (19%), Positives = 47/96 (48%)
Frame = -1
Query: 509 QLAGKEQLXXXXXXXXXXAIPRQLADNAGLDGTGLLNKLRQKHAAGEHTHGVDVISGEVV 330
++ GK ++ IP+ LA N+ D + L+++ + G + G+D+ +G
Sbjct: 429 EVKGKAKMGVYAYADALLIIPKTLAANSSYDTQDAIVALQEEASEG-YKVGLDLKTGMPF 487
Query: 329 DNFAKCVWEPALVKLNAVSAACEATAQILSVDETIK 222
D + +++ V + + +A + ++SVD+ ++
Sbjct: 488 DPEVEGIYDNYRVIRHMLHSATVIASNLISVDQILR 523
>SPBC119.10 |asn1||asparagine synthetase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 557
Score = 28.7 bits (61), Expect = 0.56
Identities = 19/46 (41%), Positives = 24/46 (52%)
Frame = +3
Query: 276 HGVKLDEGRLPHALRKVIHHLSTDNVHTVRVLPSGVLLP*FIEESG 413
H +DEG ALR VI+HL T +V T+R LL I+ G
Sbjct: 305 HTFTIDEGL--DALRDVIYHLETYDVTTIRASTPMYLLSRKIKAQG 348
>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1955
Score = 26.2 bits (55), Expect = 3.0
Identities = 8/23 (34%), Positives = 13/23 (56%)
Frame = -2
Query: 376 LGSTRTVWTLSVERWWITLRSAC 308
L T TVW + WW+++ + C
Sbjct: 1523 LFGTMTVWVAHLIYWWVSIMALC 1545
>SPBC23G7.08c |rga7||GTPase activating protein
Rga7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 25.8 bits (54), Expect = 3.9
Identities = 11/17 (64%), Positives = 11/17 (64%)
Frame = -2
Query: 304 SRPSSSLTP*VPPARPP 254
S PSSS TP PP PP
Sbjct: 3 SAPSSSTTPASPPTSPP 19
>SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein
Hsp60|Schizosaccharomyces pombe|chr 1|||Manual
Length = 582
Score = 25.4 bits (53), Expect = 5.2
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = -1
Query: 440 LADNAGLDGTGLLNKLRQKHAAGEHTHGVDVISGEVVD 327
+ +NAGL+G ++ KL++ + E G D+ VD
Sbjct: 486 ILENAGLEGNLIVGKLKELYGK-EFNIGYDIAKDRFVD 522
>SPCC330.06c |||thioredoxin peroxidase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 156
Score = 25.0 bits (52), Expect = 6.8
Identities = 17/40 (42%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
Frame = -1
Query: 437 ADNAGLDGTGLLNKLRQKHAAGEHTHGVDV---ISGEVVD 327
A +AG D +GLL LR K A +G V I EV D
Sbjct: 104 AFDAGFDASGLLGPLRSKRYAAVVENGKVVKVFIENEVTD 143
>SPAC16C9.06c |upf1||ATP-dependent RNA helicase
Upf1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 925
Score = 25.0 bits (52), Expect = 6.8
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = -3
Query: 150 DNG**HC**QTMIT*SRSRLHCLAFSIIRTPNVIIIIL-FNKWYTN 16
+NG H + ++ S HC A+ I+ PN I+ L NKW+ N
Sbjct: 23 ENGLEHQFEELLVEKQYSEEHC-AYCHIKNPNSILKCLHCNKWFCN 67
>SPAP27G11.12 |||human down-regulated in multiple cancers-1 homolog
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 797
Score = 24.6 bits (51), Expect = 9.0
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = +2
Query: 143 PLSSPIPYEGGPCRD 187
P+S P+P+EGG D
Sbjct: 426 PISMPVPFEGGTYAD 440
>SPAC1486.06 |||nicotinate phosphoribosyltransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 410
Score = 24.6 bits (51), Expect = 9.0
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = +3
Query: 246 NLSGGLAGGTHGVKLDEGRLPHALRKVIHHLSTDNV 353
N + LA HGV+ D G + KV+ H + V
Sbjct: 275 NSADDLANVFHGVRQDSGCAEEYIEKVVKHYKSIGV 310
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,819,154
Number of Sequences: 5004
Number of extensions: 32369
Number of successful extensions: 102
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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