Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS319B12f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces pombe...    25   5.2  
SPAC3A12.03c |mug145||ubiquitin-protein ligase E3 |Schizosacchar...    25   6.8  
SPBP4H10.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    25   6.8  
SPCC1442.11c |||sequence orphan|Schizosaccharomyces pombe|chr 3|...    25   9.0  

>SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 310

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -2

Query: 103 GGRAHSPPGVKWLLKPIDIHN 41
           GG  H P  V WLL+P DI++
Sbjct: 235 GGPLHDPNTVMWLLRP-DIYS 254


>SPAC3A12.03c |mug145||ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 309

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 10/42 (23%), Positives = 18/42 (42%), Gaps = 6/42 (14%)
 Frame = -1

Query: 167 VCYFHFTFSNF------RHIFFIYCLDGWTSSQPTWC*VVTE 60
           +CY  + F +        H+F   C+D W ++    C +  E
Sbjct: 207 ICYADYAFDDILRVLPCEHVFHTQCIDTWMTTMKASCPLCNE 248


>SPBP4H10.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 308

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -2

Query: 94  AHSPPGVKWLLKPIDIHNVNALPTLR 17
           A  PP +K    P+DI N++A   L+
Sbjct: 224 ASQPPSIKTDASPVDIKNMDAAEKLK 249


>SPCC1442.11c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 182

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = -2

Query: 361 VILNRNVRSIGKAYCTLDI 305
           +I+NRN +S+ + YC  DI
Sbjct: 2   LIVNRNPKSLVRGYCKKDI 20


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,925,975
Number of Sequences: 5004
Number of extensions: 35887
Number of successful extensions: 90
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)