Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS319B12f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0369 + 2649178-2655291,2655773-2656601,2656737-2657425,265...    28   4.0  
01_01_0797 - 6198401-6199114                                           28   4.0  
06_01_1135 - 9379361-9381018,9381356-9381665,9381811-9382764           28   5.2  
04_01_0305 - 4141692-4142912                                           27   6.9  
06_03_0349 + 19796189-19796641                                         27   9.1  
02_05_0316 - 27825871-27826509                                         27   9.1  

>02_01_0369 + 2649178-2655291,2655773-2656601,2656737-2657425,
            2657523-2657649,2657731-2657812,2658172-2658196
          Length = 2621

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 13/46 (28%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = +1

Query: 337  FVHYDSILHTYDSAAKNMD*PLNTHHNDIID-LNNLASSCITNSYT 471
            F+  DS+L   +   +++D P N H  DI++ +  L+   +  S+T
Sbjct: 1360 FLQKDSVLQRIEEVLEDLDLPENFHFRDIVEKIELLSKMAVGASFT 1405


>01_01_0797 - 6198401-6199114
          Length = 237

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -1

Query: 140 NFRHIFFIYCLDGWTSSQPT 81
           N RH+F + C+D W  S+ T
Sbjct: 147 NCRHVFHVECVDAWLRSRTT 166


>06_01_1135 - 9379361-9381018,9381356-9381665,9381811-9382764
          Length = 973

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 13/33 (39%), Positives = 22/33 (66%)
 Frame = +3

Query: 258 INHINSLSKSIRIIENISSVQ*ALPILRTLRFN 356
           I+ +  LSKS  ++ENI S   ++ +L T++FN
Sbjct: 346 ISFLLELSKSELLLENIGSTSGSILMLTTMKFN 378


>04_01_0305 - 4141692-4142912
          Length = 406

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 15/47 (31%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
 Frame = +2

Query: 80  RWAVSSSTHLSNK*KKYVGN--WKM*NENSKRGNLRRKDIFFNCLFE 214
           RW V+ +T LSN+ K Y+ +   ++ NEN++  N +R+  + +   E
Sbjct: 67  RWLVNENTELSNE-KSYLESRVRRLVNENTELSNEKRRAAYVSSTLE 112


>06_03_0349 + 19796189-19796641
          Length = 150

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -1

Query: 131 HIFFIYCLDGWTSSQPT 81
           HI+ + C+D W SS PT
Sbjct: 107 HIYHVDCIDLWLSSHPT 123


>02_05_0316 - 27825871-27826509
          Length = 212

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -1

Query: 143 SNFRHIFFIYCLDGWTSSQPTWC 75
           SN RH+F   CLD W + +   C
Sbjct: 133 SNCRHVFHRGCLDRWMAHEQRTC 155


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,334,201
Number of Sequences: 37544
Number of extensions: 189396
Number of successful extensions: 459
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 458
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 459
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)