Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS319B12f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81146-4|CAB03525.1|  501|Caenorhabditis elegans Hypothetical pr...    28   4.7  
Z77662-3|CAB01194.1|  284|Caenorhabditis elegans Hypothetical pr...    28   4.7  
U41023-1|AAA82340.1|  569|Caenorhabditis elegans Hypothetical pr...    27   8.1  

>Z81146-4|CAB03525.1|  501|Caenorhabditis elegans Hypothetical
           protein K10D11.6 protein.
          Length = 501

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = -1

Query: 233 RNAIINFQINN*KRYPFFLSFRVCYFHFTFSNFRH 129
           RN  +++  N      FFL+F++      F+NF+H
Sbjct: 452 RNMTVSYFTNGTATNGFFLNFKISSLETKFANFKH 486


>Z77662-3|CAB01194.1|  284|Caenorhabditis elegans Hypothetical
           protein F47B8.3 protein.
          Length = 284

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
 Frame = +1

Query: 292 GSLKIYQVYNRPYLYFVHY---DSILHTYDSAAKN 387
           G  KIY+++ +P L FV+Y   +  L T  S + N
Sbjct: 193 GQAKIYKIFRKPVLLFVNYLEDEQTLSTIQSLSDN 227


>U41023-1|AAA82340.1|  569|Caenorhabditis elegans Hypothetical
           protein F53H8.3 protein.
          Length = 569

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +3

Query: 183 ERISFLIVYLKIYDRISLISLIFYIINHI 269
           + +SF  VYL  Y RISL+ L     NH+
Sbjct: 245 DEVSFFCVYL--YTRISLLGLYLNFANHL 271


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,445,194
Number of Sequences: 27780
Number of extensions: 191843
Number of successful extensions: 483
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 475
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 483
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)