Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS319B12f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    22   3.3  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    22   3.3  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    22   4.4  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    22   4.4  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    22   4.4  
AY340960-1|AAQ16586.1|   78|Apis mellifera apisimin precursor pr...    21   7.7  
AY055108-1|AAL15544.1|   78|Apis mellifera apisimin precursor pr...    21   7.7  

>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +1

Query: 286 LLGSLKIYQVYNRPYLYFVHYDSILHTY 369
           +LGS+    V+  P L   HYDS +  Y
Sbjct: 750 MLGSIVGTPVHMAPELLSGHYDSSVDVY 777


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +1

Query: 286 LLGSLKIYQVYNRPYLYFVHYDSILHTY 369
           +LGS+    V+  P L   HYDS +  Y
Sbjct: 788 MLGSIVGTPVHMAPELLSGHYDSSVDVY 815


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = +3

Query: 192 SFLIVYLKIYDRISLISLIFYIINHINSLSKSIRI 296
           +F +   + Y  I+  S  F  I+H  S+++SIR+
Sbjct: 98  TFFVNEKQSYFHIATTSNEFIRIHHSGSITRSIRL 132


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = +3

Query: 192 SFLIVYLKIYDRISLISLIFYIINHINSLSKSIRI 296
           +F +   + Y  I+  S  F  I+H  S+++SIR+
Sbjct: 98  TFFVNEKQSYFHIATTSNEFIRIHHSGSITRSIRL 132


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = +3

Query: 192 SFLIVYLKIYDRISLISLIFYIINHINSLSKSIRI 296
           +F +   + Y  I+  S  F  I+H  S+++SIR+
Sbjct: 37  TFFVNEKQSYFHIATTSNEFIRIHHSGSITRSIRL 71


>AY340960-1|AAQ16586.1|   78|Apis mellifera apisimin precursor
           protein.
          Length = 78

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +3

Query: 255 IINHINSLSKSIRIIENISSVQ*ALPILRTLRFNI 359
           +++ INSL  SI    N+S+V  A  ++  L+  I
Sbjct: 38  VVSQINSLVSSIVSGANVSAVLLAQTLVNILQILI 72


>AY055108-1|AAL15544.1|   78|Apis mellifera apisimin precursor
           protein.
          Length = 78

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +3

Query: 255 IINHINSLSKSIRIIENISSVQ*ALPILRTLRFNI 359
           +++ INSL  SI    N+S+V  A  ++  L+  I
Sbjct: 38  VVSQINSLVSSIVSGANVSAVLLAQTLVNILQILI 72


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 128,756
Number of Sequences: 438
Number of extensions: 2704
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)