Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS319B08f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92847-3|CAB07422.2|  323|Caenorhabditis elegans Hypothetical pr...    27   6.2  
AF016451-7|AAB66003.2|  312|Caenorhabditis elegans Serpentine re...    27   6.2  
AC024756-10|AAK29882.2|  326|Caenorhabditis elegans Hypothetical...    27   8.1  

>Z92847-3|CAB07422.2|  323|Caenorhabditis elegans Hypothetical
           protein H01G02.2 protein.
          Length = 323

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 17/46 (36%), Positives = 22/46 (47%)
 Frame = +2

Query: 38  RDSRIHKRVVYNTFLFLPLSFRSLIHSLSILRNLLFPKILNFLNTF 175
           RD+   KRV     +   +S  SL   +S LRNL    IL  L+ F
Sbjct: 26  RDTLTSKRVAIKRIMVPNVSKVSLAREISCLRNLHHRNILKLLDCF 71


>AF016451-7|AAB66003.2|  312|Caenorhabditis elegans Serpentine
           receptor, class t protein64 protein.
          Length = 312

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = +2

Query: 320 PHLFFSFIEYIKINVKLYNKRELLRS 397
           P L  SFI YI I   +Y KR + RS
Sbjct: 185 PTLALSFISYILIIYSIYKKRRISRS 210


>AC024756-10|AAK29882.2|  326|Caenorhabditis elegans Hypothetical
           protein Y34D9A.2 protein.
          Length = 326

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -2

Query: 469 NCCTHHLHLVSFVNDHYVTLFRLSTTQ 389
           N C   +HL++F   HY  LF L+ T+
Sbjct: 118 NLCIAGVHLLTFARIHYEQLFGLTPTK 144


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,722,145
Number of Sequences: 27780
Number of extensions: 166385
Number of successful extensions: 377
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 372
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 377
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)