Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS319B07f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit C... 183 1e-47
SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit ... 93 3e-20
SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subu... 88 9e-19
SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit... 83 2e-17
SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subuni... 81 1e-16
SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit C... 74 1e-14
SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit... 72 6e-14
SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit ... 71 1e-13
SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein Hsp60... 31 0.10
SPBC18E5.02c ||SPBC29A3.20c|serine palmitoyltransferase complex ... 28 0.73
SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|ch... 25 5.2
SPAC167.01 |ppk4||serine/threonine protein kinase Ppk4 |Schizosa... 25 6.8
SPCP25A2.03 |||THO complex subunit |Schizosaccharomyces pombe|ch... 25 6.8
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 25 9.0
>SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit
Cct6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 183 bits (446), Expect = 1e-47
Identities = 92/165 (55%), Positives = 120/165 (72%)
Frame = +3
Query: 24 ISLLNPKAEFARAAQALAVNISAAKGIQDVMKTNLGPKGTMKMLVSGAGDIKITKDGNVL 203
+SLLNPKAE + AQAL VNISAA G+QDV+K+NLGP GT KMLV GAG IK+TKDG VL
Sbjct: 2 LSLLNPKAESIQRAQALQVNISAAIGLQDVLKSNLGPTGTTKMLVDGAGAIKLTKDGKVL 61
Query: 204 LHEMQIQHPTASLIARXXXXXXXXXXXXXXXXVLLIGELLKQADIFISEGLHPRIITEGF 383
L EMQIQ+PTAS IA+ LL+GELLKQA+++I EGLHP +I++GF
Sbjct: 62 LTEMQIQNPTASCIAKAATAQDDATGDGTTSVCLLVGELLKQAELYIREGLHPSLISDGF 121
Query: 384 DIARNKSLEVLESMKIPIEIARENLVDVARTSLKTKVHPSLADVL 518
++A+N++L L+S K E+ RE L++VA+TSL TK+ + + L
Sbjct: 122 NLAKNEALTFLDSFKTDFEVDREVLLNVAKTSLSTKISSKVVESL 166
>SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit
Cct4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 527
Score = 92.7 bits (220), Expect = 3e-20
Identities = 45/147 (30%), Positives = 82/147 (55%), Gaps = 1/147 (0%)
Frame = +3
Query: 81 NISAAKGIQDVMKTNLGPKGTMKMLVSGAGDIKITKDGNVLLHEMQIQHPTASLIARXXX 260
NI AA+ + D ++T+LGPKG KM+ +G G++ +T DG +L + + HP A ++
Sbjct: 24 NIMAARSVADAIRTSLGPKGMDKMIQTGKGEVILTNDGATILKHLSVLHPAAKMLVDLSA 83
Query: 261 XXXXXXXXXXXXXVLLIGELLKQADIFISEGLHPRIITEGFDIARNKSLEVLESMKIPIE 440
V+L G +L A+ + +G+HP +I E F A +++ ++ + IE
Sbjct: 84 AQDVEAGDGTTSVVILAGSMLACAEKLLKKGIHPTVIAESFQRAAGFTVDCMKENALAIE 143
Query: 441 IA-RENLVDVARTSLKTKVHPSLADVL 518
++ RE+L+ A TSL +K+ +++L
Sbjct: 144 LSDRESLLRAATTSLNSKIVSQYSNLL 170
>SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subunit
Cct5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 546
Score = 87.8 bits (208), Expect = 9e-19
Identities = 45/145 (31%), Positives = 86/145 (59%), Gaps = 3/145 (2%)
Frame = +3
Query: 69 ALAVNISAAKGIQDVMKTNLGPKGTMKMLVSGAGDIKITKDGNVLLHEMQIQHPTASLIA 248
A+ +I A K + ++++T+LGP+G K+L+S G+I +T DG +L +M+++H A L+
Sbjct: 35 AVKSHILATKTVANIVRTSLGPRGLDKILISPDGEITVTNDGATILDQMEVEHQIAKLLV 94
Query: 249 RXXXXXXXXXXXXXXXXVLLIGELLKQADIFISEGLHPRIITEGFDIARNKSLEVLESMK 428
+ V+L G LL+QA+ I +G+HP I +G++ A +++ L+++
Sbjct: 95 QLSKSQDDEIGDGTTGVVVLAGALLEQAEALIDKGIHPIRIADGYEKACQVAVKHLDAIS 154
Query: 429 IPIEIARENLVDV---ARTSLKTKV 494
++ + EN ++ A+TSL +KV
Sbjct: 155 DVVDFSPENTTNLFRSAKTSLGSKV 179
>SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit
Cct3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 528
Score = 83.0 bits (196), Expect = 2e-17
Identities = 39/147 (26%), Positives = 75/147 (51%), Gaps = 1/147 (0%)
Frame = +3
Query: 81 NISAAKGIQDVMKTNLGPKGTMKMLVSGAGDIKITKDGNVLLHEMQIQHPTASLIARXXX 260
NI AAK + DV++T LGP+ +KML+ G + +T DG+ +L E+++ HP A +
Sbjct: 24 NIQAAKAVADVIRTCLGPRAMLKMLLDPVGSVLLTNDGHAILREIEVAHPAAKSMIELAR 83
Query: 261 XXXXXXXXXXXXXVLLIGELLKQADIFISEGLHPRIITEGFDIARNKSLEVLESMKIPIE 440
++L GE+L A + +HP ++ F A +L +++ + +P+
Sbjct: 84 TQDEEVGDGTTSVIILAGEILAAASPLLDRKIHPVVMIRSFKQALEDALSIIDEITLPVN 143
Query: 441 I-ARENLVDVARTSLKTKVHPSLADVL 518
+ + + RT + TK+ +D++
Sbjct: 144 VDDNAEMFRLIRTCIGTKLVARWSDLM 170
>SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subunit
Cct1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 556
Score = 81.0 bits (191), Expect = 1e-16
Identities = 38/140 (27%), Positives = 78/140 (55%), Gaps = 2/140 (1%)
Frame = +3
Query: 81 NISAAKGIQDVMKTNLGPKGTMKMLVSGAGDIKITKDGNVLLHEMQIQHPTASLIARXXX 260
N+ A I +V+K++LGP G KMLV GD+ +T DG +L + ++HP ++
Sbjct: 26 NVLATTAIANVVKSSLGPVGLDKMLVDDIGDVTVTNDGATILSLLDVEHPAGKVLVELAQ 85
Query: 261 XXXXXXXXXXXXXVLLIGELLKQADIFISEGLHPRIITEGFDIARNKSLEVL-ESMKIPI 437
V++ ELL++A+ + +HP I G+ +A ++++ + + + +
Sbjct: 86 QQDKEVGDGTTSVVIIAAELLRRANELVKNKIHPTTIITGYRLAIREAVKFMTDVLSCSV 145
Query: 438 E-IARENLVDVARTSLKTKV 494
+ + +E+L++VA+TS+ +K+
Sbjct: 146 DSLGKESLINVAKTSMSSKI 165
>SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit
Cct2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 73.7 bits (173), Expect = 1e-14
Identities = 43/152 (28%), Positives = 78/152 (51%), Gaps = 6/152 (3%)
Frame = +3
Query: 57 RAAQALAVNISAAKGIQDVMKTNLGPKGTMKMLVSGA-GDIKITKDGNVLLHEMQIQHPT 233
R A + A + D++K+ LGPKG K+L S + GDI +T DG +L + + +
Sbjct: 17 RGENARLSSFVGAIAVGDLVKSTLGPKGMDKILQSNSSGDIVVTNDGATILKSIALDNAA 76
Query: 234 ASLIARXXXXXXXXXXXXXXXXVLLIGELLKQADIFISEGLHPRIITEGFDIARNKSLEV 413
A ++ + ELL+QA+I ++ +HP++I +G+ IA +++
Sbjct: 77 AKVLVNISKVQDDEVGDGTTSVCVFAAELLRQAEIMVNAKIHPQVIIDGYRIATKTAIDA 136
Query: 414 LESMKI-----PIEIARENLVDVARTSLKTKV 494
L + I P + R +L ++ART+L +K+
Sbjct: 137 LRASSIDNSSDPAKF-RSDLENIARTTLSSKI 167
>SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit
Cct8 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 546
Score = 71.7 bits (168), Expect = 6e-14
Identities = 40/144 (27%), Positives = 74/144 (51%), Gaps = 3/144 (2%)
Frame = +3
Query: 69 ALAVNISAAKGIQDVMKTNLGPKGTMKMLVSGAGDIKITKDGNVLLHEMQIQHPTASLIA 248
A+ N +A + + ++ +T+LGP G K++V+ +T D ++ E+++ HP A L+
Sbjct: 27 AVIRNCNAIRELSEITRTSLGPNGKNKIVVNHLQQTFLTNDAATIIRELEVIHPAAKLVV 86
Query: 249 RXXXXXXXXXXXXXXXXVLLIGELLKQADIFISEGLHPRIITEGFDIARNKSLEVLESM- 425
V+ GELL +A+ I GL P I +G+++A + ++EVLE +
Sbjct: 87 DATQQQENELGDAANFVVVFTGELLAKAENMIRMGLTPLEIAKGYEMALSHTMEVLEEIC 146
Query: 426 --KIPIEIARENLVDVARTSLKTK 491
KI + + L+ RT + +K
Sbjct: 147 ADKIETVESEKELIKAIRTCISSK 170
>SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit
Cct7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 558
Score = 70.9 bits (166), Expect = 1e-13
Identities = 38/146 (26%), Positives = 73/146 (50%), Gaps = 5/146 (3%)
Frame = +3
Query: 72 LAVNISAAKGIQDVMKTNLGPKGTMKMLVSGAGDIKITKDGNVLLHEMQIQHPTASLIAR 251
L NI+A +QD ++T LGP G K++V G++ I+ DG ++ + I HP A +
Sbjct: 26 LLSNINACVAVQDTIRTTLGPLGADKLMVDDRGEVVISNDGATIMKLLDIVHPAAKTLVD 85
Query: 252 XXXXXXXXXXXXXXXXVLLIGELLKQADIFISEGLHPRIITEGFDIARNKSLEVLESMKI 431
V+ GELL++A F+ +G+ +I G+ A ++ ++ + I
Sbjct: 86 IARAQDAEVGDGTTSVVVFAGELLREARTFVEDGVSSHLIIRGYRKAAQLAVNKIKEIAI 145
Query: 432 PIEIA-----RENLVDVARTSLKTKV 494
++++ R+ L A T++ +K+
Sbjct: 146 HLDLSDEGKLRDLLTKCASTAMNSKL 171
>SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein
Hsp60|Schizosaccharomyces pombe|chr 1|||Manual
Length = 582
Score = 31.1 bits (67), Expect = 0.10
Identities = 29/132 (21%), Positives = 51/132 (38%), Gaps = 4/132 (3%)
Frame = +3
Query: 114 MKTNLGPKGTMKMLVSGAGDIKITKDGNVLLHEMQIQHPTASLIAR----XXXXXXXXXX 281
+ LGPKG ++ G KITKDG + + ++ +L AR
Sbjct: 58 VSVTLGPKGRNVLIDQPFGSPKITKDGVTVARSVSLKDKFENLGARLVQDVASKTNEVAG 117
Query: 282 XXXXXXVLLIGELLKQADIFISEGLHPRIITEGFDIARNKSLEVLESMKIPIEIARENLV 461
+L + + ++ G +P + G +A + +E L++ K I + E +
Sbjct: 118 DGTTTATVLTRAIFSETVRNVAAGCNPMDLRRGIQLAVDNVVEFLQANKRDITTS-EEIS 176
Query: 462 DVARTSLKTKVH 497
VA S H
Sbjct: 177 QVATISANGDTH 188
>SPBC18E5.02c ||SPBC29A3.20c|serine palmitoyltransferase complex
subunit |Schizosaccharomyces pombe|chr 2|||Manual
Length = 509
Score = 28.3 bits (60), Expect = 0.73
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = +3
Query: 336 IFISEGLHPRIITEGFDIARNKSLEVLESMKI 431
+F+ E + I EGF IAR K +E LE +K+
Sbjct: 437 VFLLEEIVELCIAEGFLIARAKRVESLERVKV 468
>SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 764
Score = 25.4 bits (53), Expect = 5.2
Identities = 9/32 (28%), Positives = 17/32 (53%)
Frame = -1
Query: 185 GDLYVPSTRNQHFHRAFRTKVSFHYILNSFSC 90
G + S RN+ FHR F+ ++++ + C
Sbjct: 187 GYAFANSKRNRDFHRIFKVLPPEDHLIDDYGC 218
>SPAC167.01 |ppk4||serine/threonine protein kinase Ppk4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1072
Score = 25.0 bits (52), Expect = 6.8
Identities = 8/27 (29%), Positives = 19/27 (70%)
Frame = +3
Query: 396 NKSLEVLESMKIPIEIARENLVDVART 476
++SL++L+ + ++ ++ VD+ART
Sbjct: 270 SESLDLLDDFNYQVTVSNKSFVDIART 296
>SPCP25A2.03 |||THO complex subunit |Schizosaccharomyces pombe|chr
3|||Manual
Length = 752
Score = 25.0 bits (52), Expect = 6.8
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = -1
Query: 134 RTKVSFHYILNSFSCGYIYSKCLCS 60
RT +S+H LN+ Y +C+CS
Sbjct: 211 RTDLSYHKKLNTLFTAYWDLQCMCS 235
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 24.6 bits (51), Expect = 9.0
Identities = 15/61 (24%), Positives = 31/61 (50%)
Frame = -2
Query: 487 VLSEVRATSTKFSRAISIGIFIDSKTSNDLLRAMSKPSVMILGCKPSLMNMSACLSSSPM 308
VLS V+A + + IS +F+ + + + + + KPS M +SAC++ + +
Sbjct: 567 VLSAVKACLEE--KKISEALFLSTFGGKECRKCVRDAFYELQEHKPSYMRLSACIADNDL 624
Query: 307 R 305
+
Sbjct: 625 Q 625
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,040,826
Number of Sequences: 5004
Number of extensions: 37097
Number of successful extensions: 97
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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