Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS319B01f
(467 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 29 0.35
SPAC926.04c |hsp90|swo1|heat shock protein Hsp90|Schizosaccharom... 28 0.82
SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3 |Schiz... 26 2.5
SPAC13G7.10 |mug152||transcription factor |Schizosaccharomyces p... 26 3.3
SPCC1183.09c |pmp31|mug75|plasma membrane proteolipid Pmp31|Schi... 26 3.3
SPMIT.08 |||mitochondrial ribosomal small subunit|Schizosaccharo... 25 4.4
SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Ma... 25 5.8
SPAC4F10.08 |mug126||sequence orphan|Schizosaccharomyces pombe|c... 25 7.6
SPBC19G7.09 |ulp1||SUMO deconjugating enzyme Ulp1|Schizosaccharo... 25 7.6
SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr 1... 25 7.6
SPBC244.01c |sid4||SIN component scaffold protein Sid4 |Schizosa... 25 7.6
SPBC3D6.10 |apn2||AP-endonuclease Apn2|Schizosaccharomyces pombe... 25 7.6
>SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 682
Score = 29.1 bits (62), Expect = 0.35
Identities = 18/72 (25%), Positives = 30/72 (41%)
Frame = -1
Query: 410 ANKEKQKEPDDFSSEDDYTTEIPEHYLPEHQYTTIKQTSYSTVQHNLYPTIQENYPNDQQ 231
++ + PD ++ T Y+ Q + SY N P+ E+ P + Q
Sbjct: 280 SSNQSAAHPDGNNALPMDNTHANISYMQSSQSMPVNSYSYDRYTPN-QPSYLESKPGNHQ 338
Query: 230 VQYTTEQQHYSS 195
YT+EQ YS+
Sbjct: 339 PSYTSEQPMYST 350
>SPAC926.04c |hsp90|swo1|heat shock protein
Hsp90|Schizosaccharomyces pombe|chr 1|||Manual
Length = 704
Score = 27.9 bits (59), Expect = 0.82
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = -1
Query: 386 PDDFSSEDDYTTEIPEH 336
PDD S +DY T++PEH
Sbjct: 446 PDDLISLEDYITKMPEH 462
>SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1253
Score = 26.2 bits (55), Expect = 2.5
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = -1
Query: 287 TVQHNLYPTIQENYPNDQQVQ 225
T+QH LYP E Y D++ Q
Sbjct: 909 TIQHKLYPRALELYKYDKEAQ 929
>SPAC13G7.10 |mug152||transcription factor |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 390
Score = 25.8 bits (54), Expect = 3.3
Identities = 17/76 (22%), Positives = 31/76 (40%)
Frame = -1
Query: 362 DYTTEIPEHYLPEHQYTTIKQTSYSTVQHNLYPTIQENYPNDQQVQYTTEQQHYSSKPHE 183
D + P H LP +T+ + +YST L ++ + + + Q + E + +P
Sbjct: 260 DELLDWPHHNLPSQFFTSQRNPNYSTDSFLLGQSLSDPFNHTLQSFHPYESLFSAGQPPS 319
Query: 182 EYPSKRYDYPTAQPVP 135
S + QP P
Sbjct: 320 LPISPSTSQNSVQPFP 335
>SPCC1183.09c |pmp31|mug75|plasma membrane proteolipid
Pmp31|Schizosaccharomyces pombe|chr 3|||Manual
Length = 105
Score = 25.8 bits (54), Expect = 3.3
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = -1
Query: 254 ENYPNDQQVQYTTEQQHYSSKPH 186
EN PND V+YT +H S PH
Sbjct: 67 ENSPNDPLVRYTPNPEHAVS-PH 88
>SPMIT.08 |||mitochondrial ribosomal small
subunit|Schizosaccharomyces pombe|chr
mitochondrial|||Manual
Length = 227
Score = 25.4 bits (53), Expect = 4.4
Identities = 14/50 (28%), Positives = 21/50 (42%)
Frame = -1
Query: 305 KQTSYSTVQHNLYPTIQENYPNDQQVQYTTEQQHYSSKPHEEYPSKRYDY 156
K S V YP + +NYPN + ++ + H Y SK Y +
Sbjct: 50 KSDSLIEVSFPYYPLLNKNYPNPSIISNIIQK---ALSNHLLYSSKNYSF 96
>SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr
3|||Manual
Length = 963
Score = 25.0 bits (52), Expect = 5.8
Identities = 14/55 (25%), Positives = 25/55 (45%)
Frame = -1
Query: 332 LPEHQYTTIKQTSYSTVQHNLYPTIQENYPNDQQVQYTTEQQHYSSKPHEEYPSK 168
+P H + + TS V N N P+ V+ ++ Q+Y+S + PS+
Sbjct: 232 IPAHPVPSFRPTSALKVNMN------SNVPSSDSVRNSSPNQYYASTSKQSIPSQ 280
>SPAC4F10.08 |mug126||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 436
Score = 24.6 bits (51), Expect = 7.6
Identities = 14/66 (21%), Positives = 32/66 (48%)
Frame = -1
Query: 395 QKEPDDFSSEDDYTTEIPEHYLPEHQYTTIKQTSYSTVQHNLYPTIQENYPNDQQVQYTT 216
Q+ P +S + + +P+ ++TS S + + + ++ +D+Q TT
Sbjct: 184 QENPQAYSKVTQQEPQAGQKAVPQEPQANQQETS-SNQEESSFD--RQETQDDKQKPKTT 240
Query: 215 EQQHYS 198
+Q+HY+
Sbjct: 241 QQEHYN 246
>SPBC19G7.09 |ulp1||SUMO deconjugating enzyme
Ulp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 568
Score = 24.6 bits (51), Expect = 7.6
Identities = 10/34 (29%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Frame = -1
Query: 326 EHQYTTIKQ--TSYSTVQHNLYPTIQENYPNDQQ 231
E Y T++ +S++T+ N PT+ +Y N +
Sbjct: 95 ERGYVTVESDMSSHNTLDRNSKPTVSHSYTNSSK 128
>SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1004
Score = 24.6 bits (51), Expect = 7.6
Identities = 11/39 (28%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = -1
Query: 350 EIPEHYLPEHQYTTIKQTSYSTVQHNLYPTIQ-ENYPND 237
++P Y+P H+ + SY+ V L P + + +P D
Sbjct: 162 KVPNLYVPRHEEWRMMGYSYAPVPGKLSPVVSVQIHPKD 200
>SPBC244.01c |sid4||SIN component scaffold protein Sid4
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 660
Score = 24.6 bits (51), Expect = 7.6
Identities = 23/102 (22%), Positives = 42/102 (41%)
Frame = -1
Query: 449 NDIIISETGTTPCANKEKQKEPDDFSSEDDYTTEIPEHYLPEHQYTTIKQTSYSTVQHNL 270
ND ISE + K+ + S+ +D +T +P +P + +H L
Sbjct: 59 NDEQISELVNGVNSTTIKENTKKEISNPND-STRLPLEQIPG------SNNLFLDPRHQL 111
Query: 269 YPTIQENYPNDQQVQYTTEQQHYSSKPHEEYPSKRYDYPTAQ 144
Q N + + +E+ Y+S P++ K D P+A+
Sbjct: 112 GDNSQ-NAQRHHEPSFNSEKASYTSTPYKNVAPKVIDSPSAR 152
>SPBC3D6.10 |apn2||AP-endonuclease Apn2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 523
Score = 24.6 bits (51), Expect = 7.6
Identities = 22/90 (24%), Positives = 35/90 (38%), Gaps = 4/90 (4%)
Frame = -1
Query: 425 GTTPCANKEKQKEPDDFSSEDDYTTEIPEHYLPEHQYTTIKQTSYSTVQHNLYPTIQENY 246
G C N P ++ + DYT P+ LP Q I + +Y ++E Y
Sbjct: 248 GMFTCWNTRLNTRPTNYGTRIDYTLATPD-LLPWVQDADIMAEVMGSDHCPVYLDLKEEY 306
Query: 245 PNDQQ---VQYTTEQQHYSSKPHEEY-PSK 168
+ + ++ E S+ H Y PSK
Sbjct: 307 EGKKLSNFLSHSKEPPLLSTAHHSAYRPSK 336
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,863,665
Number of Sequences: 5004
Number of extensions: 36056
Number of successful extensions: 131
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 178394480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -