Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS319B01f
         (467 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    25   0.40 
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    24   0.94 
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    24   0.94 
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   2.2  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    22   2.9  
DQ855486-1|ABH88173.1|  104|Apis mellifera chemosensory protein ...    21   5.0  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               21   5.0  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    21   8.7  

>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 25.0 bits (52), Expect = 0.40
 Identities = 17/72 (23%), Positives = 31/72 (43%), Gaps = 3/72 (4%)
 Frame = -1

Query: 446 DIIISETGTTPCANKEKQK--EP-DDFSSEDDYTTEIPEHYLPEHQYTTIKQTSYSTVQH 276
           +I IS+   +  ++KE  K  EP D+ ++ D+   + P +     QY+     S      
Sbjct: 299 EIEISQNSVSTGSDKENHKTEEPNDEVATYDNTPRDFPYYMYSREQYSQSHLISNENRDF 358

Query: 275 NLYPTIQENYPN 240
              PT+    P+
Sbjct: 359 QTTPTVSVEQPH 370


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 23.8 bits (49), Expect = 0.94
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -1

Query: 254 ENYPNDQQVQYTTEQQHY 201
           E + N  ++ YTT QQ+Y
Sbjct: 194 EKWVNSSEIFYTTSQQYY 211


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 23.8 bits (49), Expect = 0.94
 Identities = 12/32 (37%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
 Frame = -3

Query: 141 SSIVSVDIYCYWAFTVFVFQCL-KFCIVNNYL 49
           S + ++D++   + +VFVF  L +F +VNNY+
Sbjct: 271 SYVKAIDVWMS-SCSVFVFLSLMEFAVVNNYM 301


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.6 bits (46), Expect = 2.2
 Identities = 12/51 (23%), Positives = 18/51 (35%)
 Frame = -1

Query: 332  LPEHQYTTIKQTSYSTVQHNLYPTIQENYPNDQQVQYTTEQQHYSSKPHEE 180
            LPE  + T +       Q N     Q+     QQ Q   +QQ    +   +
Sbjct: 1185 LPEQYFATSRIRGLQEQQRNAAMVQQQQQQQQQQQQQQQQQQQQQQQQQHQ 1235



 Score = 21.4 bits (43), Expect = 5.0
 Identities = 11/41 (26%), Positives = 16/41 (39%)
 Frame = -1

Query: 329 PEHQYTTIKQTSYSTVQHNLYPTIQENYPNDQQVQYTTEQQ 207
           P HQ     Q+++   Q    P  Q+     Q  Q   +QQ
Sbjct: 809 PPHQQLHHHQSTHPQAQAQAQPQQQQQQQQQQPQQQQQQQQ 849


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 22.2 bits (45), Expect = 2.9
 Identities = 11/39 (28%), Positives = 17/39 (43%)
 Frame = -1

Query: 359 YTTEIPEHYLPEHQYTTIKQTSYSTVQHNLYPTIQENYP 243
           Y+T  P H+   H ++ I  T +    H   P  Q + P
Sbjct: 409 YSTPGPHHHTMGHGHSHIHATPHHHHSHAATPHHQHSTP 447


>DQ855486-1|ABH88173.1|  104|Apis mellifera chemosensory protein 5
           protein.
          Length = 104

 Score = 21.4 bits (43), Expect = 5.0
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = -1

Query: 284 VQHNLYPTIQENYPNDQQV 228
           + + L P +Q+NYP + Q+
Sbjct: 75  IANTLIPFMQQNYPYEWQL 93


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.4 bits (43), Expect = 5.0
 Identities = 10/30 (33%), Positives = 14/30 (46%)
 Frame = -1

Query: 323 HQYTTIKQTSYSTVQHNLYPTIQENYPNDQ 234
           HQ   ++Q SY T      PT+ +  P  Q
Sbjct: 713 HQPGAMEQVSYLTSLERTQPTMSQMPPTAQ 742


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 20.6 bits (41), Expect = 8.7
 Identities = 11/54 (20%), Positives = 22/54 (40%)
 Frame = -1

Query: 314 TTIKQTSYSTVQHNLYPTIQENYPNDQQVQYTTEQQHYSSKPHEEYPSKRYDYP 153
           T  +Q   +  QH       ++  N QQ Q   +QQ    +  ++   ++  +P
Sbjct: 412 TEQQQQMQAQQQHQQQQQQTQHVINAQQPQQQQQQQQQQQQQQQQQQQQQQHWP 465


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 131,830
Number of Sequences: 438
Number of extensions: 2711
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12559158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)