Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS319A10f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 318 3e-88
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 182 2e-47
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 171 5e-44
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 98 8e-22
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 96 3e-21
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 84 1e-17
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 47 2e-10
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 53 2e-08
SPBC30B4.04c |sol1||SWI/SNF complex subunit Sol1|Schizosaccharom... 31 0.14
SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr... 28 0.97
SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces ... 27 1.7
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb... 26 3.0
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr... 26 3.0
SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8 |Schizosacch... 26 3.9
SPAC977.16c |dak2||dihydroxyacetone kinase Dak2 |Schizosaccharom... 25 5.2
SPAC343.16 |lys2||homoaconitate hydratase Lys2|Schizosaccharomyc... 25 5.2
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 25 5.2
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam... 25 6.8
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 6.8
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 25 6.8
SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 25 9.0
SPBC530.14c |dsk1||SR protein-specific kinase Dsk1|Schizosacchar... 25 9.0
SPBC36.02c |||spermidine family transporter |Schizosaccharomyces... 25 9.0
SPCC736.11 |ago1|csp9|argonaute|Schizosaccharomyces pombe|chr 3|... 25 9.0
SPAC23H4.13c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 25 9.0
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 318 bits (781), Expect = 3e-88
Identities = 150/168 (89%), Positives = 157/168 (93%)
Frame = +1
Query: 16 GDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEK 195
GDGV+HTVPIYEGYALPHAI+RLDLAGRDLTDYLMKIL ERGY+F+TTAEREIVRDIKEK
Sbjct: 156 GDGVTHTVPIYEGYALPHAIMRLDLAGRDLTDYLMKILMERGYTFSTTAEREIVRDIKEK 215
Query: 196 LCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMEACGIH 375
LCYVALDFEQE+ TAA SSSLEKSYELPDGQVITIGNERFR PEALFQPS LG+E GIH
Sbjct: 216 LCYVALDFEQELQTAAQSSSLEKSYELPDGQVITIGNERFRAPEALFQPSALGLENAGIH 275
Query: 376 ETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPS 519
E TYNSIMKCDVDIRKDLY N V+SGGTTMYPGIADRMQKEI ALAPS
Sbjct: 276 EATYNSIMKCDVDIRKDLYGNVVMSGGTTMYPGIADRMQKEIQALAPS 323
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 182 bits (444), Expect = 2e-47
Identities = 83/165 (50%), Positives = 115/165 (69%)
Frame = +1
Query: 16 GDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEK 195
GDGV+H VP+YE L H + RLD+AGRD T YL+ +L +GY+F TA+ E VR++KEK
Sbjct: 156 GDGVTHIVPVYESVVLNHLVGRLDVAGRDATRYLISLLLRKGYAFNRTADFETVREMKEK 215
Query: 196 LCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMEACGIH 375
LCYV+ D E + + ++ L ++Y LPDG+VI +G+ER+ CPE LFQP +G E G+
Sbjct: 216 LCYVSYDLELDHKLSEETTVLMRNYTLPDGRVIKVGSERYECPECLFQPHLVGSEQPGLS 275
Query: 376 ETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITAL 510
E +++I DVDIRK LY VLSGG++MY G+ R++KEI L
Sbjct: 276 EFIFDTIQAADVDIRKYLYRAIVLSGGSSMYAGLPSRLEKEIKQL 320
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 171 bits (416), Expect = 5e-44
Identities = 76/166 (45%), Positives = 111/166 (66%)
Frame = +1
Query: 16 GDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEK 195
GDG++H+VPIY+G+++P AI + ++ GRD+TDYL L + G+ ++AE+EIVR+IKEK
Sbjct: 161 GDGLTHSVPIYDGFSIPSAIQQEEIGGRDVTDYLQLQLRKSGHELVSSAEKEIVREIKEK 220
Query: 196 LCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMEACGIH 375
CYVA DF E+ + +Y+LPD Q IT+G E F PE LF P +G EA G+H
Sbjct: 221 CCYVASDFRSEIESWTEHKPQIHTYQLPDNQTITLGTECFSAPEVLFNPEMMGSEASGLH 280
Query: 376 ETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALA 513
+ SI+ D+D+R LY+N VLSGG+T+ G +R E+ A++
Sbjct: 281 IQLFKSILLSDIDLRSTLYSNIVLSGGSTLLRGFGERFISELRAIS 326
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 97.9 bits (233), Expect = 8e-22
Identities = 59/169 (34%), Positives = 89/169 (52%), Gaps = 7/169 (4%)
Frame = +1
Query: 16 GDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGY--SFTTTAEREIVRDIK 189
GDGV+H +P+ EGY + +I + LAGRD+T ++ +L +R S TAER IK
Sbjct: 187 GDGVTHIIPVAEGYVIGSSIKTMPLAGRDVTYFVQSLLRDRNEPDSSLKTAER-----IK 241
Query: 190 EKLCYVALDFEQEMA--TAASSSSLEKSYELPDGQ--VITIGNERFRCPEALFQPSFLGM 357
E+ CYV D +E + L+ + E G I +G ERF PE F P
Sbjct: 242 EECCYVCPDIVKEFSRFDREPDRYLKYASESITGHSTTIDVGFERFLAPEIFFNPEIASS 301
Query: 358 E-ACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEI 501
+ + E N + +D+RK LY N VLSGG+T++ +R+Q+++
Sbjct: 302 DFLTPLPELVDNVVQSSPIDVRKGLYKNIVLSGGSTLFKNFGNRLQRDL 350
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 95.9 bits (228), Expect = 3e-21
Identities = 60/188 (31%), Positives = 93/188 (49%), Gaps = 20/188 (10%)
Frame = +1
Query: 16 GDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEK 195
G +H +P+ + A+ R+D+ G+ LT+YL ++++ R Y+ E IV +IKE
Sbjct: 164 GYSFTHIIPVIDFSVQEQAVKRVDVGGKLLTNYLKEVISYRKYNMME--ETYIVNEIKES 221
Query: 196 LCYVALDFEQEMATAASS--SSLEKSYELPD------------------GQVITIGNERF 315
+CYV+ +F+++M S LE Y LPD QV+ + NERF
Sbjct: 222 VCYVSQNFKEDMEICHEKPRSKLEICYALPDYSTGKHGYIVRDINQKIEQQVLNLSNERF 281
Query: 316 RCPEALFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQK 495
PE LF PS + + GI E S+ +I+ L N V GG +PG R+
Sbjct: 282 MIPELLFSPSDIEIREAGIPEAVMQSVTHFPENIQAMLLENVVTIGGNCKFPGFHKRLSS 341
Query: 496 EITALAPS 519
E+ +LAP+
Sbjct: 342 ELRSLAPA 349
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 83.8 bits (198), Expect = 1e-17
Identities = 48/132 (36%), Positives = 72/132 (54%), Gaps = 9/132 (6%)
Frame = +1
Query: 145 SFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCP 324
S+ +R ++ + KE + V LD + A A+S + K +E PDG G ERFR
Sbjct: 243 SYEIFQKRRVIEEWKESVLDV-LDTPFDEAKASSRNP--KPFEFPDGVTHKFGQERFRIS 299
Query: 325 EALFQPSFLGMEAC---------GIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGI 477
E LF PSF + G+HE Y SI+ CD ++R L N V++GGT++ PG+
Sbjct: 300 EILFNPSFSASRSAETTPPQGSVGLHELVYQSILACDSELRSPLLNNIVVTGGTSLIPGL 359
Query: 478 ADRMQKEITALA 513
++R+Q E+ LA
Sbjct: 360 SERLQAEVQRLA 371
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 47.2 bits (107), Expect(2) = 2e-10
Identities = 21/50 (42%), Positives = 31/50 (62%)
Frame = +1
Query: 367 GIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAP 516
GI + N I +CDVDIR L N ++ GGT++ G + R+Q E++ L P
Sbjct: 326 GIPQLFQNCISECDVDIRASLLNNVIVCGGTSLMQGFSLRLQNELSKLYP 375
Score = 33.1 bits (72), Expect(2) = 2e-10
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +1
Query: 238 AASSSSLEKSYELPDGQVITIGNERFRCPEALFQP 342
++ ++ E +E PDG + G ER++ PE LF P
Sbjct: 254 SSETTIAESEFEFPDGSRMMFGAERYQIPEHLFVP 288
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 53.2 bits (122), Expect = 2e-08
Identities = 21/70 (30%), Positives = 44/70 (62%)
Frame = +1
Query: 307 ERFRCPEALFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADR 486
E+ R PE +F PS +G++ GI E + + + ++ ++ L +N +++GG PG+ R
Sbjct: 594 EQIRVPEVIFSPSIVGIDQAGILEIMRSILQRHSLEEQQKLVSNVLITGGLGSLPGMETR 653
Query: 487 MQKEITALAP 516
+++E+T++ P
Sbjct: 654 IKRELTSIMP 663
Score = 35.5 bits (78), Expect = 0.005
Identities = 19/83 (22%), Positives = 35/83 (42%)
Frame = +1
Query: 16 GDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEK 195
G+ SH +P+ G + R+ G + YL+K+ + SF +
Sbjct: 173 GNAASHVIPVLNGERILSEAKRISWGGSQSSSYLLKLFQIKYPSFPIKMLPSQAELLMHD 232
Query: 196 LCYVALDFEQEMATAASSSSLEK 264
C+V+ D+ ++A A LE+
Sbjct: 233 HCHVSSDYTHDIAHALDRDILER 255
>SPBC30B4.04c |sol1||SWI/SNF complex subunit
Sol1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 865
Score = 30.7 bits (66), Expect = 0.14
Identities = 19/57 (33%), Positives = 30/57 (52%)
Frame = +2
Query: 173 SFVTSRRSCATSLSTSSRRWPPLHPAAPSRSLTNFPTVRSSPSETKDSVAQRLSSNP 343
+F +R S A + SS R P +P+AP+R PTV++S S A+ ++ P
Sbjct: 335 AFTANRFSPAAPTTVSSERNAPPYPSAPTRPTP--PTVQTSSSAAPVDSAEPVAYQP 389
>SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 583
Score = 27.9 bits (59), Expect = 0.97
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Frame = +2
Query: 209 LSTSSRRWPPL--HPAAPSRSLTNFPTVRSSPSETKDSVAQRLSSNPRSWV 355
LS + WP L HP P R P++ + P +T S + S +P S+V
Sbjct: 107 LSDLQKHWPSLKPHPLPPKRVSLGIPSISNPPVDTVISDSP-TSPHPPSFV 156
>SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1429
Score = 27.1 bits (57), Expect = 1.7
Identities = 17/52 (32%), Positives = 24/52 (46%)
Frame = +2
Query: 194 SCATSLSTSSRRWPPLHPAAPSRSLTNFPTVRSSPSETKDSVAQRLSSNPRS 349
S ++ TS R PP + + SL N P RSS E D V + P++
Sbjct: 40 SPVSTARTSIARRPPSTVGSQTGSLVNAPPKRSSGIERFDHVTGTAENRPQT 91
>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 26.2 bits (55), Expect = 3.0
Identities = 9/27 (33%), Positives = 18/27 (66%)
Frame = +1
Query: 421 KDLYANTVLSGGTTMYPGIADRMQKEI 501
K+LY++ ++ GG +PG A +++ I
Sbjct: 527 KNLYSSILIVGGAGQFPGFAHLLEERI 553
Score = 25.4 bits (53), Expect = 5.2
Identities = 9/36 (25%), Positives = 21/36 (58%)
Frame = +1
Query: 43 IYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSF 150
+ EG +P++ ++++ G D+T MK+L + +
Sbjct: 308 VEEGVVVPNSRIKINYGGDDITLLFMKLLMRSHFPY 343
>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1275
Score = 26.2 bits (55), Expect = 3.0
Identities = 14/26 (53%), Positives = 19/26 (73%), Gaps = 1/26 (3%)
Frame = +2
Query: 233 PPLHPAA-PSRSLTNFPTVRSSPSET 307
PP HPA+ SR + ++ TV+SSPS T
Sbjct: 75 PPQHPASINSRRVASY-TVQSSPSRT 99
>SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 269
Score = 25.8 bits (54), Expect = 3.9
Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Frame = +2
Query: 242 HPAAPSRSLTNFPTVRSSPSETKDSV--AQRLSSNPR 346
HPA+ SLTN ++ + P+ D + S +PR
Sbjct: 131 HPASVENSLTNVNSIHAQPTTISDMIDLTDETSYDPR 167
>SPAC977.16c |dak2||dihydroxyacetone kinase Dak2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 591
Score = 25.4 bits (53), Expect = 5.2
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = -3
Query: 306 VSDGDDLTVGKFVRLLEGAAGCSGGHLLLEVESDVAQLLLDV 181
V+ GDD++VGK L G G L+ ++ A L LD+
Sbjct: 135 VAVGDDVSVGKKRGALVGRRGLGATVLVHKIAGSAAALGLDL 176
>SPAC343.16 |lys2||homoaconitate hydratase Lys2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 721
Score = 25.4 bits (53), Expect = 5.2
Identities = 8/22 (36%), Positives = 14/22 (63%)
Frame = +1
Query: 1 EFGTRGDGVSHTVPIYEGYALP 66
+F G G+ H + + +GYA+P
Sbjct: 153 DFYPAGRGIGHQIMVEQGYAMP 174
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 25.4 bits (53), Expect = 5.2
Identities = 23/82 (28%), Positives = 40/82 (48%)
Frame = +2
Query: 173 SFVTSRRSCATSLSTSSRRWPPLHPAAPSRSLTNFPTVRSSPSETKDSVAQRLSSNPRSW 352
S V+S S TSLSTS + PA S + +V S +++ S + ++ +
Sbjct: 879 SVVSSSLSSTTSLSTSIPVTSSVAPAVTSTG-SETSSVVGSGTDSATSSSWTAETSSSAI 937
Query: 353 VWKLAASTRPHITPS*SATWTS 418
+AAS P + S +++W+S
Sbjct: 938 TSSVAASVTPTSSSS-ASSWSS 958
>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
Mam3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1082
Score = 25.0 bits (52), Expect = 6.8
Identities = 30/84 (35%), Positives = 40/84 (47%), Gaps = 2/84 (2%)
Frame = +2
Query: 173 SFVTSRRSCA--TSLSTSSRRWPPLHPAAPSRSLTNFPTVRSSPSETKDSVAQRLSSNPR 346
S VTS S +SLS+S A+ S SLTN + S+PS T + +S
Sbjct: 497 SLVTSSTSFTKFSSLSSSQLSTENFTSASSSLSLTNAKSSLSTPSTTIPTSNSSVSLQTS 556
Query: 347 SWVWKLAASTRPHITPS*SATWTS 418
S L S+ P I+ S +AT TS
Sbjct: 557 S---SLIISS-PIISSSLTATSTS 576
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 25.0 bits (52), Expect = 6.8
Identities = 19/79 (24%), Positives = 38/79 (48%)
Frame = +2
Query: 182 TSRRSCATSLSTSSRRWPPLHPAAPSRSLTNFPTVRSSPSETKDSVAQRLSSNPRSWVWK 361
+S S ++SLS+SS ++ S +++ + SSP+ T +++ SS+
Sbjct: 245 SSSSSTSSSLSSSSSSSTASSSSSSSSIISSSSSSSSSPTSTSSTISSSSSSSSSPTSTS 304
Query: 362 LAASTRPHITPS*SATWTS 418
S+ + S S+T +S
Sbjct: 305 STISSSSSSSSSFSSTLSS 323
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 25.0 bits (52), Expect = 6.8
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = +2
Query: 2 NSARGATVSPTPCPSTRDTHSPT 70
++AR A T PS RD H PT
Sbjct: 830 DAARAAIEKYTSIPSLRDLHKPT 852
>SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 636
Score = 24.6 bits (51), Expect = 9.0
Identities = 15/55 (27%), Positives = 24/55 (43%)
Frame = +2
Query: 233 PPLHPAAPSRSLTNFPTVRSSPSETKDSVAQRLSSNPRSWVWKLAASTRPHITPS 397
PP+ +PS SL P S + + S R ++ +S + K + P T S
Sbjct: 217 PPIEEYSPSVSLPTSPVAEESYNNVQRSSTVRNNTTQKSVLKKPSRKMSPAYTSS 271
>SPBC530.14c |dsk1||SR protein-specific kinase
Dsk1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 544
Score = 24.6 bits (51), Expect = 9.0
Identities = 15/55 (27%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Frame = +2
Query: 188 RRSCATSLSTSSRRWPPLHPAAPSRS-LTNFPTVRSSPSETKDSVAQRLSSNPRS 349
R++ A + + +S+ + P++P S L+ FP++ + SE +Q+ +S+P S
Sbjct: 276 RKTFAKNPTKNSKPAGQVIPSSPFTSTLSRFPSLEGAVSEISLRDSQKHNSHPNS 330
>SPBC36.02c |||spermidine family transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 577
Score = 24.6 bits (51), Expect = 9.0
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +2
Query: 191 RSCATSLSTSSRRWPPLHPAAPSRSLTNFPTVRSSPS 301
RS ++ STS+R + +P S N V S+PS
Sbjct: 45 RSATSNFSTSAR-FAARYPTTAGESFQNLTPVNSNPS 80
>SPCC736.11 |ago1|csp9|argonaute|Schizosaccharomyces pombe|chr
3|||Manual
Length = 834
Score = 24.6 bits (51), Expect = 9.0
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = +3
Query: 321 PRGSLPTLVLGYGSLRHP 374
P G++PTL+LG G + HP
Sbjct: 568 PLGNVPTLILG-GDVYHP 584
>SPAC23H4.13c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 184
Score = 24.6 bits (51), Expect = 9.0
Identities = 16/36 (44%), Positives = 19/36 (52%)
Frame = +1
Query: 184 IKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQV 291
IKEKL VA EQE + SSL+ S + G V
Sbjct: 111 IKEKLRRVANITEQEQQCIPAESSLDLSIQAMKGVV 146
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,329,198
Number of Sequences: 5004
Number of extensions: 47535
Number of successful extensions: 201
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 196
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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