Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS319A04f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0895 - 32593155-32593190,32594228-32594279,32594544-325945...    28   5.2  
03_01_0474 + 3646724-3646789,3648952-3649067,3649547-3649595,364...    27   9.1  

>02_05_0895 -
           32593155-32593190,32594228-32594279,32594544-32594584,
           32594795-32594906,32595195-32595268,32595349-32595587,
           32595710-32596678,32596725-32596878,32596957-32597244,
           32597393-32597534,32598679-32598752,32598870-32598890
          Length = 733

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 14/52 (26%), Positives = 25/52 (48%)
 Frame = -2

Query: 355 VFESQAGTNFSNEIRTQQMFTIDSHGEGITSCCNT*HQVGRDLVQPLSIKKI 200
           +  S AG N S E    ++ T  +H    +S C +    G+ L++P + K +
Sbjct: 293 IIRSDAGNNMSEE-SYSEVVTSPTHSSSPSSSCCSDDDCGKTLLEPSTYKDV 343


>03_01_0474 +
           3646724-3646789,3648952-3649067,3649547-3649595,
           3649641-3649697,3649743-3650993
          Length = 512

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 11/33 (33%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
 Frame = +3

Query: 69  YGPSRCKWRL*HHLLANSLMFLGYFYDG-WLLR 164
           Y P+R +W     +    + F+G  YDG W L+
Sbjct: 323 YDPNRNRWSYISEMSTGMVPFIGVVYDGKWFLK 355


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,693,732
Number of Sequences: 37544
Number of extensions: 245572
Number of successful extensions: 506
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 496
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 506
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)