Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS318H12f
         (316 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    24   0.50 
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    22   1.5  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   4.7  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          20   8.1  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          20   8.1  

>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 23.8 bits (49), Expect = 0.50
 Identities = 9/28 (32%), Positives = 11/28 (39%)
 Frame = -3

Query: 308 PGGQSREQGHQDHHRGPAPRHSEKHSAS 225
           PG      GH   H    P H   H+A+
Sbjct: 412 PGPHHHTMGHGHSHIHATPHHHHSHAAT 439


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 22.2 bits (45), Expect = 1.5
 Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
 Frame = -1

Query: 304 AGRAVSRDIRTTTEARRPGTARNTR--RPKPTELS 206
           AG++   DI  TT+A  P    N R    K +ELS
Sbjct: 402 AGKSEYVDITVTTDASVPSLVSNVRITSVKSSELS 436


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 20.6 bits (41), Expect = 4.7
 Identities = 5/13 (38%), Positives = 11/13 (84%)
 Frame = +1

Query: 109 YYNGNGVDSVETK 147
           Y NG+G++S++ +
Sbjct: 824 YVNGSGIESIQNR 836


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 19.8 bits (39), Expect = 8.1
 Identities = 10/34 (29%), Positives = 15/34 (44%)
 Frame = -1

Query: 223 KPTELSACCRERSETPRHRNKPSRPVWSRRSPHH 122
           KPT L A   E+    RH  +  +   + R  H+
Sbjct: 140 KPTPLGAVATEKMFVARHLAETPKNTSAVRYTHY 173


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 19.8 bits (39), Expect = 8.1
 Identities = 8/20 (40%), Positives = 9/20 (45%)
 Frame = -2

Query: 315 PXSGRAEP*AGTSGPPQRPG 256
           P S    P    S PP+ PG
Sbjct: 124 PESRDGPPSVSLSSPPREPG 143


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 94,870
Number of Sequences: 438
Number of extensions: 1925
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  6719922
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)