Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS318H11f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex det...    22   3.3  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    22   3.3  
EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate isome...    21   5.8  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    21   5.8  
DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex det...    21   7.7  
DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex det...    21   7.7  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   7.7  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   7.7  

>DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = -1

Query: 191 KLFYCYNYRKICLN 150
           K  YC NYRK+  N
Sbjct: 97  KKLYCNNYRKLYYN 110


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = +2

Query: 38  TIFLYLRREVLNK-SLTILILIIYRKFTMKTIILYI 142
           T+F  L  E++   SLT+ +L  Y  FTM  + L +
Sbjct: 279 TVFFLLLAEIIPPTSLTVPLLGKYLLFTMVLVTLSV 314


>EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate
           isomerase protein.
          Length = 247

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +3

Query: 333 YFCHKKSITHNNLLLLSKNTIK 398
           Y  + K+I  NN+ +  +NT K
Sbjct: 46  YLTYAKNILPNNISIAGQNTYK 67


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +2

Query: 32  LWTIFLYLRREVLNK 76
           +WT   ++RR VLNK
Sbjct: 177 IWTPHGWMRRNVLNK 191


>DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = -1

Query: 191 KLFYCYNYRKICLN 150
           K  YC NY+K+  N
Sbjct: 97  KKLYCNNYKKLYYN 110


>DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = -1

Query: 191 KLFYCYNYRKICLN 150
           K  YC NY+K+  N
Sbjct: 97  KKLYCNNYKKLYYN 110


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 5/13 (38%), Positives = 10/13 (76%)
 Frame = -2

Query: 313 LIIFYLLCWFEVC 275
           +I +Y  CW+++C
Sbjct: 482 MIGYYPCCWWKIC 494


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 5/13 (38%), Positives = 10/13 (76%)
 Frame = -2

Query: 313 LIIFYLLCWFEVC 275
           +I +Y  CW+++C
Sbjct: 535 MIGYYPCCWWKIC 547


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 105,265
Number of Sequences: 438
Number of extensions: 1958
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)