Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS318G09f
         (521 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X14767-1|CAA32875.1|  474|Homo sapiens GABA-A receptor beta 1 su...    33   0.46 
M59216-1|AAA35862.1|  474|Homo sapiens gamma-aminobutyric acid r...    33   0.46 
BC022449-1|AAH22449.1|  474|Homo sapiens gamma-aminobutyric acid...    33   0.46 
S77554-1|AAB33983.1|  474|Homo sapiens GABAA receptor beta 2 sub...    31   2.4  
S77553-1|AAB33982.1|  512|Homo sapiens GABAA receptor beta 2 sub...    31   2.4  
S67368-1|AAB29370.1|  474|Homo sapiens gamma-aminobutyric acid A...    31   2.4  
M82919-1|AAA52511.1|  473|Homo sapiens GABA-alpha receptor beta-...    31   2.4  
BC105639-1|AAI05640.1|  474|Homo sapiens GABRB2 protein protein.       31   2.4  
BC099719-1|AAH99719.1|  474|Homo sapiens GABRB2 protein protein.       31   2.4  
BC099705-1|AAH99705.1|  474|Homo sapiens GABRB2 protein protein.       31   2.4  
BC010641-1|AAH10641.1|  473|Homo sapiens gamma-aminobutyric acid...    31   2.4  
AY061759-1|AAL33802.1| 3270|Homo sapiens nesprin-2 gamma protein.      30   5.7  
AK090430-1|BAC03411.1| 1752|Homo sapiens FLJ00347 protein protein.     30   5.7  
AF495911-1|AAN60443.1| 6884|Homo sapiens nesprin-2 protein.            30   5.7  
AF435011-1|AAL33548.1| 6885|Homo sapiens NUANCE protein.               30   5.7  
AB023228-1|BAA76855.3| 3541|Homo sapiens KIAA1011 protein protein.     30   5.7  

>X14767-1|CAA32875.1|  474|Homo sapiens GABA-A receptor beta 1
           subunit protein.
          Length = 474

 Score = 33.5 bits (73), Expect = 0.46
 Identities = 14/27 (51%), Positives = 19/27 (70%)
 Frame = +3

Query: 183 KISCGNFVLQTYLHRTICTILSYKYFW 263
           K + G F+LQTY+  T+ TILS+  FW
Sbjct: 240 KRNIGYFILQTYMPSTLITILSWVSFW 266


>M59216-1|AAA35862.1|  474|Homo sapiens gamma-aminobutyric acid
           receptor beta-1 subunit protein.
          Length = 474

 Score = 33.5 bits (73), Expect = 0.46
 Identities = 14/27 (51%), Positives = 19/27 (70%)
 Frame = +3

Query: 183 KISCGNFVLQTYLHRTICTILSYKYFW 263
           K + G F+LQTY+  T+ TILS+  FW
Sbjct: 240 KRNIGYFILQTYMPSTLITILSWVSFW 266


>BC022449-1|AAH22449.1|  474|Homo sapiens gamma-aminobutyric acid
           (GABA) A receptor, beta 1 protein.
          Length = 474

 Score = 33.5 bits (73), Expect = 0.46
 Identities = 14/27 (51%), Positives = 19/27 (70%)
 Frame = +3

Query: 183 KISCGNFVLQTYLHRTICTILSYKYFW 263
           K + G F+LQTY+  T+ TILS+  FW
Sbjct: 240 KRNIGYFILQTYMPSTLITILSWVSFW 266


>S77554-1|AAB33983.1|  474|Homo sapiens GABAA receptor beta 2
           subunit protein.
          Length = 474

 Score = 31.1 bits (67), Expect = 2.4
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = +3

Query: 183 KISCGNFVLQTYLHRTICTILSYKYFW 263
           K + G F+LQTY+   + TILS+  FW
Sbjct: 239 KRNIGYFILQTYMPSILITILSWVSFW 265


>S77553-1|AAB33982.1|  512|Homo sapiens GABAA receptor beta 2
           subunit protein.
          Length = 512

 Score = 31.1 bits (67), Expect = 2.4
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = +3

Query: 183 KISCGNFVLQTYLHRTICTILSYKYFW 263
           K + G F+LQTY+   + TILS+  FW
Sbjct: 239 KRNIGYFILQTYMPSILITILSWVSFW 265


>S67368-1|AAB29370.1|  474|Homo sapiens gamma-aminobutyric acid A
           receptor beta 2 subunit protein.
          Length = 474

 Score = 31.1 bits (67), Expect = 2.4
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = +3

Query: 183 KISCGNFVLQTYLHRTICTILSYKYFW 263
           K + G F+LQTY+   + TILS+  FW
Sbjct: 239 KRNIGYFILQTYMPSILITILSWVSFW 265


>M82919-1|AAA52511.1|  473|Homo sapiens GABA-alpha receptor beta-3
           subunit protein.
          Length = 473

 Score = 31.1 bits (67), Expect = 2.4
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = +3

Query: 183 KISCGNFVLQTYLHRTICTILSYKYFW 263
           K + G F+LQTY+   + TILS+  FW
Sbjct: 240 KRNIGYFILQTYMPSILITILSWVSFW 266


>BC105639-1|AAI05640.1|  474|Homo sapiens GABRB2 protein protein.
          Length = 474

 Score = 31.1 bits (67), Expect = 2.4
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = +3

Query: 183 KISCGNFVLQTYLHRTICTILSYKYFW 263
           K + G F+LQTY+   + TILS+  FW
Sbjct: 239 KRNIGYFILQTYMPSILITILSWVSFW 265


>BC099719-1|AAH99719.1|  474|Homo sapiens GABRB2 protein protein.
          Length = 474

 Score = 31.1 bits (67), Expect = 2.4
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = +3

Query: 183 KISCGNFVLQTYLHRTICTILSYKYFW 263
           K + G F+LQTY+   + TILS+  FW
Sbjct: 239 KRNIGYFILQTYMPSILITILSWVSFW 265


>BC099705-1|AAH99705.1|  474|Homo sapiens GABRB2 protein protein.
          Length = 474

 Score = 31.1 bits (67), Expect = 2.4
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = +3

Query: 183 KISCGNFVLQTYLHRTICTILSYKYFW 263
           K + G F+LQTY+   + TILS+  FW
Sbjct: 239 KRNIGYFILQTYMPSILITILSWVSFW 265


>BC010641-1|AAH10641.1|  473|Homo sapiens gamma-aminobutyric acid
           (GABA) A receptor, beta 3 protein.
          Length = 473

 Score = 31.1 bits (67), Expect = 2.4
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = +3

Query: 183 KISCGNFVLQTYLHRTICTILSYKYFW 263
           K + G F+LQTY+   + TILS+  FW
Sbjct: 240 KRNIGYFILQTYMPSILITILSWVSFW 266


>AY061759-1|AAL33802.1| 3270|Homo sapiens nesprin-2 gamma protein.
          Length = 3270

 Score = 29.9 bits (64), Expect = 5.7
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = -3

Query: 399  QCNKQWHTVIGIFRQNNQHISEIKLLIFHSSNNL 298
            + N+QWH V G+  +  QH+ ++   I  S N +
Sbjct: 1531 EMNRQWHRVHGMLNRKIQHLDQLLESITESENKI 1564


>AK090430-1|BAC03411.1| 1752|Homo sapiens FLJ00347 protein protein.
          Length = 1752

 Score = 29.9 bits (64), Expect = 5.7
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = -3

Query: 399 QCNKQWHTVIGIFRQNNQHISEIKLLIFHSSNNL 298
           + N+QWH V G+  +  QH+ ++   I  S N +
Sbjct: 14  EMNRQWHRVHGMLNRKIQHLEQLLESITESENKI 47


>AF495911-1|AAN60443.1| 6884|Homo sapiens nesprin-2 protein.
          Length = 6884

 Score = 29.9 bits (64), Expect = 5.7
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = -3

Query: 399  QCNKQWHTVIGIFRQNNQHISEIKLLIFHSSNNL 298
            + N+QWH V G+  +  QH+ ++   I  S N +
Sbjct: 5145 EMNRQWHRVHGMLNRKIQHLDQLLESITESENKI 5178


>AF435011-1|AAL33548.1| 6885|Homo sapiens NUANCE protein.
          Length = 6885

 Score = 29.9 bits (64), Expect = 5.7
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = -3

Query: 399  QCNKQWHTVIGIFRQNNQHISEIKLLIFHSSNNL 298
            + N+QWH V G+  +  QH+ ++   I  S N +
Sbjct: 5146 EMNRQWHRVHGMLNRKIQHLEQLLESITESENKI 5179


>AB023228-1|BAA76855.3| 3541|Homo sapiens KIAA1011 protein protein.
          Length = 3541

 Score = 29.9 bits (64), Expect = 5.7
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = -3

Query: 399  QCNKQWHTVIGIFRQNNQHISEIKLLIFHSSNNL 298
            + N+QWH V G+  +  QH+ ++   I  S N +
Sbjct: 1780 EMNRQWHRVHGMLNRKIQHLEQLLESITESENKI 1813


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 69,248,620
Number of Sequences: 237096
Number of extensions: 1344094
Number of successful extensions: 1655
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1638
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1655
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4990119376
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)