Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS318G09f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    27   0.15 
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    27   0.15 
AB095514-1|BAC76336.1|   72|Apis mellifera ecdyson receptor prot...    27   0.15 
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    26   0.27 
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    23   1.4  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    23   1.9  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    23   1.9  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   1.9  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    23   1.9  
AB264335-1|BAF44090.1|   87|Apis mellifera ecdysone-induced prot...    23   2.5  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    23   2.5  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    22   3.3  
AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phospha...    22   4.4  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    21   5.8  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    21   5.8  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    21   5.8  

>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 26.6 bits (56), Expect = 0.15
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +3

Query: 195 GNFVLQTYLHRTICTILSYKYFW 263
           G FV QTYL   +  +LS+  FW
Sbjct: 242 GYFVFQTYLPSILIVMLSWVSFW 264


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 26.6 bits (56), Expect = 0.15
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +3

Query: 309 NCEILKVLSQKCVDCFVEKC 368
           NCEI   + +KC +C ++KC
Sbjct: 228 NCEIDMYMRRKCQECRLKKC 247


>AB095514-1|BAC76336.1|   72|Apis mellifera ecdyson receptor
           protein.
          Length = 72

 Score = 26.6 bits (56), Expect = 0.15
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +3

Query: 309 NCEILKVLSQKCVDCFVEKC 368
           NCEI   + +KC +C ++KC
Sbjct: 25  NCEIDMYMRRKCQECRLKKC 44


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 25.8 bits (54), Expect = 0.27
 Identities = 15/49 (30%), Positives = 24/49 (48%)
 Frame = +3

Query: 117 YSKLFSL*IARLHSLPTYIIIEKISCGNFVLQTYLHRTICTILSYKYFW 263
           YS   +L  A    L  Y  +++   GNF++Q Y    +  +LS+  FW
Sbjct: 189 YSASTTLSHAEYSMLLVYFHLQR-HMGNFLIQVYGPCVLLVVLSWVSFW 236


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = +3

Query: 195 GNFVLQTYLHRTICTILSYKYFW 263
           G F++Q Y+   +  +LS+  FW
Sbjct: 245 GYFLIQVYVPCVLIVVLSWVSFW 267


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 11/41 (26%), Positives = 21/41 (51%)
 Frame = +1

Query: 157 RYLRISLLKK*VVVTLSYKLTYTVPFALYCLINIFGNQNLV 279
           R   + + K    +   + L +T P+A   LI ++GN+ L+
Sbjct: 274 RSAEVRIAKVAFTIFFLFLLAWT-PYATVALIGVYGNRELL 313


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = +3

Query: 195 GNFVLQTYLHRTICTILSYKYFW 263
           G+ ++QT+   T+  +LS+  FW
Sbjct: 200 GHHLIQTFAPSTLVVMLSWFSFW 222


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 8/31 (25%), Positives = 16/31 (51%)
 Frame = +3

Query: 171 IIIEKISCGNFVLQTYLHRTICTILSYKYFW 263
           + + K   G ++  TY+   +  I+S+  FW
Sbjct: 237 VFVLKRRLGYYLFHTYIPTCLIVIMSWVSFW 267


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 11/41 (26%), Positives = 21/41 (51%)
 Frame = +1

Query: 157 RYLRISLLKK*VVVTLSYKLTYTVPFALYCLINIFGNQNLV 279
           R   + + K    +   + L +T P+A   LI ++GN+ L+
Sbjct: 274 RSAEVRIAKVAFTIFFLFLLAWT-PYATVALIGVYGNRELL 313


>AB264335-1|BAF44090.1|   87|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 87

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = +3

Query: 312 CEILKVLSQKCVDCFVEKC 368
           C IL++   +C  C ++KC
Sbjct: 61  CSILRINRNRCQYCRLKKC 79


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = +3

Query: 312 CEILKVLSQKCVDCFVEKC 368
           C IL++   +C  C ++KC
Sbjct: 110 CSILRINRNRCQYCRLKKC 128


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 6/45 (13%)
 Frame = +1

Query: 148 AYTRYLRIS------LLKK*VVVTLSYKLTYTVPFALYCLINIFG 264
           AY RY  I+      L +  V++ +    TYT+P+AL  ++ ++G
Sbjct: 142 AYDRYSTIARPLDGKLSRGQVILFIVLIWTYTIPWALMPVMGVWG 186


>AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phosphate
           dehydrogenase protein.
          Length = 363

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +1

Query: 358 SKNANNRVPLFVTL 399
           +KN  NR PLF T+
Sbjct: 313 AKNMENRFPLFTTV 326


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -3

Query: 291 IRIHHQILITKNIYKTV 241
           IRIHH   IT++I  T+
Sbjct: 118 IRIHHSGSITRSIRLTI 134


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -3

Query: 291 IRIHHQILITKNIYKTV 241
           IRIHH   IT++I  T+
Sbjct: 118 IRIHHSGSITRSIRLTI 134


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -3

Query: 291 IRIHHQILITKNIYKTV 241
           IRIHH   IT++I  T+
Sbjct: 57  IRIHHSGSITRSIRLTI 73


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 148,521
Number of Sequences: 438
Number of extensions: 3926
Number of successful extensions: 17
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)