Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS318G08f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    25   6.8  
SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr ...    25   9.0  
SPBC365.08c |||Der1-like |Schizosaccharomyces pombe|chr 2|||Manual     25   9.0  

>SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 547

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -1

Query: 173 VGSTFLFDYFHRRLGGLSFDDLDHVSSK 90
           VG++F  D+F+ RLG +    +D  SSK
Sbjct: 28  VGNSFGGDHFNFRLGEIKLLSMDFPSSK 55


>SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 774

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +3

Query: 24  NSLRTNDNKRSRSDPIITLYDLFT*HMIQIIKT 122
           +SL++   K  +S  IIT+ DLF+    Q+  T
Sbjct: 11  SSLKSTSKKGEKSRNIITIQDLFSKREAQLTDT 43


>SPBC365.08c |||Der1-like |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 224

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = -3

Query: 459 YIFSVISTKFYITILF*YFFSTFLKYRYVISRHVKAIFNY 340
           Y+++     F + I F Y +ST+L+  +V +R+ K    Y
Sbjct: 64  YLYAGTGFDFIMNIYFFYQYSTYLE-NFVFARNAKKYIIY 102


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,945,217
Number of Sequences: 5004
Number of extensions: 36433
Number of successful extensions: 85
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)