Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS318G08f
(521 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic ac... 26 0.20
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 25 0.47
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 25 0.47
DQ325124-1|ABD14138.1| 179|Apis mellifera complementary sex det... 24 1.1
DQ325123-1|ABD14137.1| 179|Apis mellifera complementary sex det... 24 1.1
DQ325122-1|ABD14136.1| 179|Apis mellifera complementary sex det... 24 1.1
AY350617-1|AAQ57659.1| 428|Apis mellifera complementary sex det... 23 1.9
DQ325132-1|ABD14146.1| 189|Apis mellifera complementary sex det... 22 4.4
DQ325131-1|ABD14145.1| 189|Apis mellifera complementary sex det... 22 4.4
DQ325082-1|ABD14096.1| 179|Apis mellifera complementary sex det... 21 5.8
AY898652-1|AAX83121.1| 349|Apis mellifera AKH receptor protein. 21 7.7
>AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha-3 protein.
Length = 537
Score = 26.2 bits (55), Expect = 0.20
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 3/42 (7%)
Frame = -1
Query: 272 NTEYYNYI---YIFQQFNVTRRNEMYYFRIRHFISSVGSTFL 156
N EYY Y FN+T R + ++ + I VG TFL
Sbjct: 225 NEEYYPCCTEPYSDITFNITMRRKTLFYTVNLIIPCVGITFL 266
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 25.0 bits (52), Expect = 0.47
Identities = 14/47 (29%), Positives = 22/47 (46%)
Frame = -3
Query: 462 FYIFSVISTKFYITILF*YFFSTFLKYRYVISRHVKAIFNYSLHLLN 322
F +FS + T+ + YF T++ Y + RH K + N L N
Sbjct: 23 FVLFSFLRTRTKLQPT--YFHHTYIIYESLCGRHEKRLLNELLSSYN 67
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 25.0 bits (52), Expect = 0.47
Identities = 14/47 (29%), Positives = 22/47 (46%)
Frame = -3
Query: 462 FYIFSVISTKFYITILF*YFFSTFLKYRYVISRHVKAIFNYSLHLLN 322
F +FS + T+ + YF T++ Y + RH K + N L N
Sbjct: 23 FVLFSFLRTRTKLQPT--YFHHTYIIYESLCGRHEKRLLNELLSSYN 67
>DQ325124-1|ABD14138.1| 179|Apis mellifera complementary sex
determiner protein.
Length = 179
Score = 23.8 bits (49), Expect = 1.1
Identities = 9/24 (37%), Positives = 17/24 (70%)
Frame = +2
Query: 95 LTHDPNHQNSNLQDVYENNRIKMY 166
L+++ N+ N+N + +Y NN K+Y
Sbjct: 85 LSNNYNYNNNNYKKLYCNNYKKLY 108
>DQ325123-1|ABD14137.1| 179|Apis mellifera complementary sex
determiner protein.
Length = 179
Score = 23.8 bits (49), Expect = 1.1
Identities = 9/24 (37%), Positives = 17/24 (70%)
Frame = +2
Query: 95 LTHDPNHQNSNLQDVYENNRIKMY 166
L+++ N+ N+N + +Y NN K+Y
Sbjct: 85 LSNNYNYNNNNYKKLYCNNYKKLY 108
>DQ325122-1|ABD14136.1| 179|Apis mellifera complementary sex
determiner protein.
Length = 179
Score = 23.8 bits (49), Expect = 1.1
Identities = 9/24 (37%), Positives = 17/24 (70%)
Frame = +2
Query: 95 LTHDPNHQNSNLQDVYENNRIKMY 166
L+++ N+ N+N + +Y NN K+Y
Sbjct: 85 LSNNYNYNNNNYKKLYCNNYRKLY 108
>AY350617-1|AAQ57659.1| 428|Apis mellifera complementary sex
determiner protein.
Length = 428
Score = 23.0 bits (47), Expect = 1.9
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = +2
Query: 92 YLTHDPNHQNSNLQDVYENNRIKMY 166
Y ++ N+ N+N + Y NN K+Y
Sbjct: 331 YNYNNNNYNNNNYNNNYNNNCKKLY 355
>DQ325132-1|ABD14146.1| 189|Apis mellifera complementary sex
determiner protein.
Length = 189
Score = 21.8 bits (44), Expect = 4.4
Identities = 8/19 (42%), Positives = 12/19 (63%)
Frame = +2
Query: 110 NHQNSNLQDVYENNRIKMY 166
N+ N+N + Y NN K+Y
Sbjct: 99 NNYNNNYNNNYNNNYKKLY 117
>DQ325131-1|ABD14145.1| 189|Apis mellifera complementary sex
determiner protein.
Length = 189
Score = 21.8 bits (44), Expect = 4.4
Identities = 8/19 (42%), Positives = 12/19 (63%)
Frame = +2
Query: 110 NHQNSNLQDVYENNRIKMY 166
N+ N+N + Y NN K+Y
Sbjct: 99 NNYNNNYNNNYNNNYKKLY 117
>DQ325082-1|ABD14096.1| 179|Apis mellifera complementary sex
determiner protein.
Length = 179
Score = 21.4 bits (43), Expect = 5.8
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = +2
Query: 95 LTHDPNHQNSNLQDVYENNRIKMY 166
L++ H N+N + Y NN K+Y
Sbjct: 85 LSNKTIHNNNNYKYNYNNNCKKLY 108
>AY898652-1|AAX83121.1| 349|Apis mellifera AKH receptor protein.
Length = 349
Score = 21.0 bits (42), Expect = 7.7
Identities = 9/37 (24%), Positives = 19/37 (51%)
Frame = -1
Query: 272 NTEYYNYIYIFQQFNVTRRNEMYYFRIRHFISSVGST 162
N+ Y + I +FN + ++ + IS++G+T
Sbjct: 20 NSNYTELLPIDMRFNEGHIVSIVFYSVLMIISAIGNT 56
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 130,415
Number of Sequences: 438
Number of extensions: 2585
Number of successful extensions: 24
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -