Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS318G07f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC14F5.04c |pgk1||phosphoglycerate kinase|Schizosaccharomyces ... 163 2e-41
SPAC17G8.06c |||dihydroxy-acid dehydratase|Schizosaccharomyces p... 31 0.10
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 28 0.97
SPCC18B5.07c |nup61||nucleoporin Nup61|Schizosaccharomyces pombe... 26 3.0
SPBC11B10.05c |rsp1||random septum position protein Rsp1|Schizos... 26 3.0
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces... 26 3.9
SPCC306.04c |set1||histone lysine methyltransferase Set1|Schizos... 25 6.8
SPCC622.18 |rpl6||60S ribosomal protein L6|Schizosaccharomyces p... 25 6.8
SPBC4F6.10 |vps901|vps9a|guanyl-nucleotide exchange factor Vps90... 25 6.8
>SPBC14F5.04c |pgk1||phosphoglycerate kinase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 414
Score = 163 bits (395), Expect = 2e-41
Identities = 79/124 (63%), Positives = 94/124 (75%)
Frame = +3
Query: 135 KLSIDALNLTGKRVLMRVDFNVPLKEGVITNNQRIVAALDSVKYALDKGAKSVVLMSHLG 314
KL+I ++L GK VL+RVDFNVPL ITNN RIV AL ++KYAL++ K+V+LMSHLG
Sbjct: 6 KLAITDVDLKGKNVLIRVDFNVPLDGDRITNNARIVGALPTIKYALEQQPKAVILMSHLG 65
Query: 315 RPDGQVNLKYTLKPVAEELKKLLNKDVTFLTDCIGPEVETACADPSAGSIILLENLRFHI 494
RP+G KY+LKPVA EL KLL K V FL DC+GPEVE AC + G +ILLENLRFHI
Sbjct: 66 RPNGARVAKYSLKPVAAELSKLLGKPVKFLDDCVGPEVEKACKEAKGGEVILLENLRFHI 125
Query: 495 EXEG 506
E EG
Sbjct: 126 EEEG 129
>SPAC17G8.06c |||dihydroxy-acid dehydratase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 598
Score = 31.1 bits (67), Expect = 0.10
Identities = 23/68 (33%), Positives = 33/68 (48%)
Frame = +3
Query: 207 KEGVITNNQRIVAALDSVKYALDKGAKSVVLMSHLGRPDGQVNLKYTLKPVAEELKKLLN 386
K V +AAL+ ++ KG K+VV++ G P G + LKP + + L
Sbjct: 443 KARVFDAENDFIAALERGEFK--KGEKTVVIIRFEG-PKGGPGMPEMLKPSSAIMGAGLG 499
Query: 387 KDVTFLTD 410
KDV LTD
Sbjct: 500 KDVALLTD 507
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 27.9 bits (59), Expect = 0.97
Identities = 24/99 (24%), Positives = 45/99 (45%)
Frame = -2
Query: 475 SSRIIEPAEGSAHAVSTSGPMQSVKNVTSLFSNFFSSSATGLRVYLRFTWPSGLPKCDIS 296
SS I + S+ STS + S + +S FS+ SSS+ + F+ IS
Sbjct: 287 SSTISSSSSSSSSPTSTSSTISSSSSSSSSFSSTLSSSS--MSSSSSFSSSPTSSSSTIS 344
Query: 295 TTDLAPLSKAYLTESKAATMRWLFVITPSLSGTLKSTRI 179
++ +P S ++ + + ++ F T S S + S+ +
Sbjct: 345 SSSSSPSSSSFSSTTSSSKSSSSFSSTVSSSSSTSSSTL 383
>SPCC18B5.07c |nup61||nucleoporin Nup61|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 565
Score = 26.2 bits (55), Expect = 3.0
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = -2
Query: 505 PSXSMWKRRFSSRIIEPAEGSAHAVSTS 422
P +++ FSS +PAEG+A VSTS
Sbjct: 121 PLFDEYRQHFSSIEKKPAEGNAFIVSTS 148
>SPBC11B10.05c |rsp1||random septum position protein
Rsp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 494
Score = 26.2 bits (55), Expect = 3.0
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +2
Query: 26 TRISLHRNLKISRKLPKTESFEE 94
T SLHR+ S K+ K SF+E
Sbjct: 138 TNFSLHRSFSASGKMEKNNSFKE 160
>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3699
Score = 25.8 bits (54), Expect = 3.9
Identities = 16/63 (25%), Positives = 27/63 (42%)
Frame = -2
Query: 484 RRFSSRIIEPAEGSAHAVSTSGPMQSVKNVTSLFSNFFSSSATGLRVYLRFTWPSGLPKC 305
+ F S ++E + VS + P +S N S +SSA+ + + P +PK
Sbjct: 176 QEFLSIVVENYKSMTTVVSEAFPPRSAPNTPSSHPMSAASSASPAEIGMEHAGPKMIPKA 235
Query: 304 DIS 296
S
Sbjct: 236 SSS 238
>SPCC306.04c |set1||histone lysine methyltransferase
Set1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 920
Score = 25.0 bits (52), Expect = 6.8
Identities = 13/50 (26%), Positives = 23/50 (46%)
Frame = +3
Query: 369 LKKLLNKDVTFLTDCIGPEVETACADPSAGSIILLENLRFHIEXEGKGVD 518
LK L + + + +GPE T + ++ E LR+H + G+ D
Sbjct: 73 LKSLQTINYDYNENSLGPEPPTQVFVSNISPLVTSEQLRYHFKSFGEVFD 122
>SPCC622.18 |rpl6||60S ribosomal protein L6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 195
Score = 25.0 bits (52), Expect = 6.8
Identities = 11/34 (32%), Positives = 17/34 (50%)
Frame = -2
Query: 349 RVYLRFTWPSGLPKCDISTTDLAPLSKAYLTESK 248
RV R+ + PK D+S + +KAY + K
Sbjct: 95 RVNHRYVIATSAPKIDVSGVSVEKFTKAYFAKQK 128
>SPBC4F6.10 |vps901|vps9a|guanyl-nucleotide exchange factor Vps901
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 537
Score = 25.0 bits (52), Expect = 6.8
Identities = 15/33 (45%), Positives = 19/33 (57%)
Frame = -2
Query: 238 MRWLFVITPSLSGTLKSTRIRTLLPVKLSASIL 140
M++L + TP +STR R LL V LS IL
Sbjct: 426 MKYLQIDTPESKEYPRSTRPRALLIVALSQLIL 458
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,049,938
Number of Sequences: 5004
Number of extensions: 37858
Number of successful extensions: 123
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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