Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS318G02f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC36.11 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||M...    29   0.42 
SPAC1A6.06c |meu31||sequence orphan|Schizosaccharomyces pombe|ch...    26   3.0  
SPAC17C9.12 |||MSP domain|Schizosaccharomyces pombe|chr 1|||Manual     25   5.2  
SPCC338.11c |rrg1|uvi22|methyltransferase |Schizosaccharomyces p...    25   6.8  
SPAC637.09 |||ribonuclease H70 |Schizosaccharomyces pombe|chr 1|...    25   9.0  

>SPBC36.11 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 343

 Score = 29.1 bits (62), Expect = 0.42
 Identities = 13/29 (44%), Positives = 14/29 (48%)
 Frame = +2

Query: 335 AHCRCNTHQSLHHYEGEVSKHSIPWLSTP 421
           A  R NT Q    Y G    HS PW S+P
Sbjct: 146 AAVRKNTEQEKMGYRGGYQMHSTPWASSP 174


>SPAC1A6.06c |meu31||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 185

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 13/53 (24%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
 Frame = +1

Query: 148 SFFYIVIEFCNVRALMLNMILIITVYKVRNRNNCSINIM-FTYNILLQIFVYT 303
           +FF + +  C +    +N  ++  +   RN  +CS+N   F + I+    VY+
Sbjct: 83  AFFSMCLRSCTIIYFSMNPYMLCEILNARNVISCSLNTQKFFFIIVAASNVYS 135


>SPAC17C9.12 |||MSP domain|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 319

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 10/35 (28%), Positives = 16/35 (45%)
 Frame = +2

Query: 314 INCIPVDAHCRCNTHQSLHHYEGEVSKHSIPWLST 418
           I C+  +     N H + HH   + +  SIP  +T
Sbjct: 116 IRCVYSEGPSTANAHANAHHQPAQTTTTSIPTSAT 150


>SPCC338.11c |rrg1|uvi22|methyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 303

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +2

Query: 365 LHHYEGEVSKHSIPWLSTPD 424
           +  Y G VS H + W++ PD
Sbjct: 184 IQQYAGSVSCHVLDWMNPPD 203


>SPAC637.09 |||ribonuclease H70 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 623

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +2

Query: 302 LHN*INCIPVDAHCRCNTHQSLHHYEGEVSKHSIPWLST 418
           L++ +NC+        +T    +H  G  SK S+ WL+T
Sbjct: 352 LNSDLNCLKFTHPHIIDTANIYNHTRGPPSKPSLKWLAT 390


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,968,402
Number of Sequences: 5004
Number of extensions: 38048
Number of successful extensions: 93
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)