Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS318G01f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase Swr1|Schizo...    29   0.42 
SPBC2D10.11c |||nucleosome assembly protein Nap2 |Schizosaccharo...    28   0.97 
SPBC11C11.07 |rpl1801|rpl18-1, rpl18|60S ribosomal protein L18|S...    27   1.3  
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom...    27   2.2  
SPAC2C4.07c |||ribonuclease II |Schizosaccharomyces pombe|chr 1|...    26   3.0  
SPAPB17E12.13 |rpl1802|rpl18-2|60S ribosomal protein L18|Schizos...    26   3.9  
SPAC4H3.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   3.9  
SPBC2F12.05c |||sterol binding ankyrin repeat protein|Schizosacc...    25   6.8  
SPBC2A9.07c |||zf-PARP-type zinc finger protein|Schizosaccharomy...    25   6.8  
SPBC19F5.05c |ppp1|SPBC25D12.01c|pescadillo-family BRCT domain p...    25   6.8  
SPAC12G12.13c |cid14||poly|Schizosaccharomyces pombe|chr 1|||Manual    25   9.0  

>SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase
           Swr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1288

 Score = 29.1 bits (62), Expect = 0.42
 Identities = 20/66 (30%), Positives = 37/66 (56%), Gaps = 1/66 (1%)
 Frame = -1

Query: 197 TDDLVQGNEAIKSEIIQKDFDSKIE-ELNPKQGSDSEPVETLEAGLKTDDSETLEVPEES 21
           +DDL+  +E +K +    D    IE E   ++ SD EP+ +     + +++E  ++ EES
Sbjct: 254 SDDLLSVDE-LKLKYSNPDLIKNIEREEEAEETSDDEPLSS-----EDEENEDEDITEES 307

Query: 20  QLKKKK 3
            L+K+K
Sbjct: 308 NLRKRK 313


>SPBC2D10.11c |||nucleosome assembly protein Nap2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 379

 Score = 27.9 bits (59), Expect = 0.97
 Identities = 24/74 (32%), Positives = 32/74 (43%), Gaps = 8/74 (10%)
 Frame = -1

Query: 236 IEVQEFDDVVEPPTDDL---VQGNEAIKSEIIQKDFDSKIEE-----LNPKQGSDSEPVE 81
           ++  E DD ++  T+ L    Q  E  K +II    D  +EE      N     DSE   
Sbjct: 300 LDDDESDDGLDDKTELLELDYQLGEVFKDQIIPLAIDCFLEEGDLSDFNQMDEEDSEDAY 359

Query: 80  TLEAGLKTDDSETL 39
           T E  L +DD E L
Sbjct: 360 TDEEDLSSDDEEIL 373


>SPBC11C11.07 |rpl1801|rpl18-1, rpl18|60S ribosomal protein
           L18|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 187

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = -1

Query: 134 SKIEELNPKQGSDSEPVETLEAGLKTDDSETLEVPEES 21
           SKI  L  ++ + S+   T+  G  TDD   L VP+ S
Sbjct: 64  SKIAALTSRKSASSQNKTTVVVGTVTDDERMLTVPKLS 101


>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 595

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = -3

Query: 351 RHHEVVLEICLGKGVHLKNGLLRCMTFKQ*KRKRPLKSYRSPRIR 217
           RH   V E  L KG+   N  +  + FK+  R++  KS ++P+ R
Sbjct: 540 RHLRHVPEYLLPKGMQAVNKDIGFVPFKKNNRRKVFKSRKNPKHR 584


>SPAC2C4.07c |||ribonuclease II |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 927

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 17/76 (22%), Positives = 36/76 (47%)
 Frame = -1

Query: 230 VQEFDDVVEPPTDDLVQGNEAIKSEIIQKDFDSKIEELNPKQGSDSEPVETLEAGLKTDD 51
           ++   D+V+ PTD  ++G ++   +    +  ++  ++ PK        E +    K D+
Sbjct: 60  LERIKDIVQRPTDTQLKGQDSNHKKASLTETKTEKAKVKPK-AKKKNSKEKISKSSKQDE 118

Query: 50  SETLEVPEESQLKKKK 3
            +T +V +ES  K  K
Sbjct: 119 HKT-DVHKESVSKLSK 133


>SPAPB17E12.13 |rpl1802|rpl18-2|60S ribosomal protein
           L18|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 187

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = -1

Query: 134 SKIEELNPKQGSDSEPVETLEAGLKTDDSETLEVPEES 21
           SKI  L  ++ +  E   T+  G  TDD   L VP+ S
Sbjct: 64  SKIAALTSRKSASLEGKTTVIVGTVTDDERLLTVPKLS 101


>SPAC4H3.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 345

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 14/51 (27%), Positives = 29/51 (56%)
 Frame = -1

Query: 170 AIKSEIIQKDFDSKIEELNPKQGSDSEPVETLEAGLKTDDSETLEVPEESQ 18
           A + + IQ++F+ +I +L  +Q      +E LEA  +  +SET +  ++ +
Sbjct: 134 AKEEQKIQEEFERQITDLLEEQQQLKLEIERLEAETERANSETEQYEKQKE 184


>SPBC2F12.05c |||sterol binding ankyrin repeat
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1310

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
 Frame = -1

Query: 152 IQKDFDS-KIEELNPKQGS-DSEPVETLEAGLKTDDSETLEVPEESQL 15
           IQ D  + K +E++ K  S  ++P    +    TDD++  E P+E+ +
Sbjct: 816 IQSDVSAPKAKEVSEKPVSHQAKPSNASQLSRNTDDTQAKEAPKEASI 863


>SPBC2A9.07c |||zf-PARP-type zinc finger protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 274

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 13/45 (28%), Positives = 19/45 (42%)
 Frame = -1

Query: 137 DSKIEELNPKQGSDSEPVETLEAGLKTDDSETLEVPEESQLKKKK 3
           D KIEE       + EP++ L    K    E   VP +    ++K
Sbjct: 135 DRKIEEGELTSEEEKEPIQDLRKSHKRKSVEKSSVPNKKHKAERK 179


>SPBC19F5.05c |ppp1|SPBC25D12.01c|pescadillo-family BRCT domain
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 607

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 11/76 (14%), Positives = 37/76 (48%)
 Frame = -1

Query: 275 HSSNEKEKDH*KVIEVQEFDDVVEPPTDDLVQGNEAIKSEIIQKDFDSKIEELNPKQGSD 96
           H +N+  + +   ++  +  D+V    + + Q  +  +    + + +  ++E  P  G+D
Sbjct: 276 HGNNKNARKNIATLK-SKIRDIVNSDANVVEQSEKTTEDADEEPETEENLDEFKPADGAD 334

Query: 95  SEPVETLEAGLKTDDS 48
           +E  ++L + + + ++
Sbjct: 335 NEDSKSLVSHISSSNT 350


>SPAC12G12.13c |cid14||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 684

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 17/69 (24%), Positives = 31/69 (44%)
 Frame = -1

Query: 236 IEVQEFDDVVEPPTDDLVQGNEAIKSEIIQKDFDSKIEELNPKQGSDSEPVETLEAGLKT 57
           +E +   D  +   DDL + NE+I++   +      +     +  S+S    +    + +
Sbjct: 596 VEDESDSDETDAAKDDLFKVNESIETNGHENFQKQALTSTGEQSSSNSRANPSKLFNISS 655

Query: 56  DDSETLEVP 30
           DDSE  EVP
Sbjct: 656 DDSED-EVP 663


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,679,166
Number of Sequences: 5004
Number of extensions: 29655
Number of successful extensions: 104
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)