Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS318F12f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 40 3e-04
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 39 5e-04
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 39 5e-04
SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101 |Sch... 38 0.001
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 36 0.005
SPBC4B4.07c |usp102|mud1|U1 snRNP-associated protein Usp102|Schi... 34 0.011
SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po... 33 0.026
SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog |Schi... 31 0.079
SPBC83.05 |||mitochondrial RNA-binding protein |Schizosaccharomy... 31 0.10
SPBC1289.02c |uap2||U2 snRNP-associated protein Uap2|Schizosacch... 31 0.14
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 30 0.24
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p... 29 0.32
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra... 29 0.42
SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p... 29 0.42
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei... 29 0.56
SPCC1223.08c |dfr1||dihydrofolate reductase Dfr1|Schizosaccharom... 27 1.3
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 27 1.7
SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual 27 2.2
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 27 2.2
SPBC1773.09c |mug184||meiotically upregulated gene Mug184|Schizo... 26 3.9
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 25 5.2
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ... 25 6.8
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr... 25 9.0
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 39.5 bits (88), Expect = 3e-04
Identities = 23/66 (34%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Frame = +1
Query: 1 PNSARGKKEDLEREFD-KYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEMLGV 177
PN + ++D++ E D KYGK+ + V N G F++FEN AE A + ++ G
Sbjct: 523 PNWVQELEQDVKEECDEKYGKVVHIAVVPNELGQIFVKFENADFAEKAITGLHQRWFGGR 582
Query: 178 TLKVEI 195
T+K I
Sbjct: 583 TIKASI 588
Score = 30.7 bits (66), Expect = 0.14
Identities = 16/59 (27%), Positives = 31/59 (52%), Gaps = 4/59 (6%)
Frame = +1
Query: 25 EDLEREFDKYGKLNSVWVALNPP----GFAFIEFENLQEAEDACSAMNGTEMLGVTLKV 189
ED++ F+ +G + V + + GF +I++ N A +A MNG ++ G ++V
Sbjct: 354 EDVKAIFEPFGDIEFVHLQRDDQNRSKGFGYIQYRNPISARNALEKMNGFDLAGRNMRV 412
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 38.7 bits (86), Expect = 5e-04
Identities = 20/62 (32%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Frame = +1
Query: 19 KKEDLEREFDKYGKLNSVWVALNPPG----FAFIEFENLQEAEDACSAMNGTEMLGVTLK 186
K + LE F K+GK+ + + G FAF+ ++ + AE+A +++NGTE+ G +
Sbjct: 120 KPQHLEPHFSKFGKVREIKIPTKGGGRMCGFAFVWMKDRKAAEEAMNSLNGTEIDGRPIA 179
Query: 187 VE 192
V+
Sbjct: 180 VD 181
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 38.7 bits (86), Expect = 5e-04
Identities = 20/45 (44%), Positives = 28/45 (62%)
Frame = +1
Query: 58 KLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEMLGVTLKVE 192
K N + +P FAFI FEN A++A +++NG+ G TLKVE
Sbjct: 55 KKNKSTDSKSPTLFAFITFENKCSADNAIASLNGSSFQGNTLKVE 99
>SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 261
Score = 37.9 bits (84), Expect = 0.001
Identities = 21/66 (31%), Positives = 35/66 (53%), Gaps = 5/66 (7%)
Frame = +1
Query: 19 KKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACSAMNGTEMLGVTL 183
K+ D+EREF +YG + + V N G+AF+ FE ++ + A A G + G +
Sbjct: 112 KESDIEREFTRYGPIERIRVVRNKVTGKSMGYAFVVFERERDLKVAYKASAGLMLNGRRI 171
Query: 184 KVEISR 201
V++ R
Sbjct: 172 VVDVER 177
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 35.5 bits (78), Expect = 0.005
Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 4/55 (7%)
Frame = +1
Query: 22 KEDLEREFDKYGKLNSVWVAL----NPPGFAFIEFENLQEAEDACSAMNGTEMLG 174
K+D++ YG+L SV V + GFAF EF +EA +A A+ T +LG
Sbjct: 734 KKDVQSLLGAYGQLRSVRVPKKFDRSARGFAFAEFVTAREAANAMRALKNTHLLG 788
Score = 30.7 bits (66), Expect = 0.14
Identities = 14/37 (37%), Positives = 23/37 (62%)
Frame = +1
Query: 94 GFAFIEFENLQEAEDACSAMNGTEMLGVTLKVEISRK 204
GF F+EF++ A A AMNG + G L++++S +
Sbjct: 666 GFGFVEFKDKASAVAAMHAMNGFVLDGHKLEIKLSHQ 702
Score = 30.3 bits (65), Expect = 0.18
Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 5/61 (8%)
Frame = +1
Query: 22 KEDLEREFDKYGKLNSVWVAL-----NPPGFAFIEFENLQEAEDACSAMNGTEMLGVTLK 186
++DL+ F +G+L V + + NP GFA+I+F + +A A ++ G L
Sbjct: 336 EDDLKSLFGPFGQLEQVHMPIDKKTNNPKGFAYIDFHDADDAVRAYLELDAKPFQGRLLH 395
Query: 187 V 189
V
Sbjct: 396 V 396
>SPBC4B4.07c |usp102|mud1|U1 snRNP-associated protein
Usp102|Schizosaccharomyces pombe|chr 2|||Manual
Length = 249
Score = 34.3 bits (75), Expect = 0.011
Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
Frame = +1
Query: 22 KEDLEREFDKYGKLNSVWV--ALNPPGFAFIEFENLQEAEDACSAMNGTEMLGVTLKVEI 195
K LE F YGK+ V L G AF+ F+NL+ A A + G + G + ++
Sbjct: 43 KRILEHLFGSYGKVIDVQARKTLRMRGQAFVVFDNLENASRALKDLQGYPLYGKPMMIQY 102
Query: 196 SR 201
S+
Sbjct: 103 SK 104
>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 365
Score = 33.1 bits (72), Expect = 0.026
Identities = 19/60 (31%), Positives = 33/60 (55%)
Frame = +1
Query: 22 KEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEMLGVTLKVEISR 201
+ED+ F YG++ + +N GF F+E E+ ++A D + G E +G + VE +R
Sbjct: 17 REDMMDFFKGYGQILDCKL-MN--GFGFVEVEDARDARDIVNDFQGKEFMGSRIVVEPAR 73
>SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 137
Score = 31.5 bits (68), Expect = 0.079
Identities = 14/47 (29%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Frame = +1
Query: 25 EDLEREFDKYGKLNSVWVA--LNPPGFAFIEFENLQEAEDACSAMNG 159
E++ F +YG + + + + G AF+ +EN+Q+A AC ++G
Sbjct: 26 EEMYDLFGRYGPVRQIRLGNTVQTRGTAFVVYENVQDARRACEKLSG 72
>SPBC83.05 |||mitochondrial RNA-binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 773
Score = 31.1 bits (67), Expect = 0.10
Identities = 18/46 (39%), Positives = 25/46 (54%)
Frame = +1
Query: 22 KEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNG 159
+E L F YGKL SV +N P A + F +L+ A A + M+G
Sbjct: 176 QERLYSIFRTYGKLRSV--TINSPTSATLSFSSLRSATSALNCMHG 219
>SPBC1289.02c |uap2||U2 snRNP-associated protein
Uap2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 367
Score = 30.7 bits (66), Expect = 0.14
Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Frame = +1
Query: 22 KEDLEREFDKYGKL-NSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEMLGVTLKVEI 195
K+D+ E +K G++ N V P G + F N +EAE M G G ++ I
Sbjct: 273 KDDITEEAEKCGRVTNVVLYDKEPDGVVTVRFSNNEEAEACVRLMQGRYFDGRVVEASI 331
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 29.9 bits (64), Expect = 0.24
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +1
Query: 94 GFAFIEFENLQEAEDACSAMNGTEMLGVTLKV 189
GF F EF + Q+ E AC +N ++ G ++V
Sbjct: 53 GFGFCEFLHEQDVEYACQILNQVKLFGKPIRV 84
>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 29.5 bits (63), Expect = 0.32
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +1
Query: 94 GFAFIEFENLQEAEDACSAMNGTEMLGVTLKVEIS 198
GF F EF+N +AE A S ++G + G L + +
Sbjct: 352 GFCFCEFKNPSDAEVAISGLDGKDTYGNKLHAQFA 386
>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
transcription Rct1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 29.1 bits (62), Expect = 0.42
Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 5/64 (7%)
Frame = +1
Query: 25 EDLEREFDKYGKLNSVWVALNPPG-----FAFIEFENLQEAEDACSAMNGTEMLGVTLKV 189
EDLE F ++GK+ S V + +AFIEF+N + E A M + + V
Sbjct: 258 EDLELIFSRFGKIISCQVIRDKETGDSLQYAFIEFDNKESVEKAYFKMQNVLIDDSRIHV 317
Query: 190 EISR 201
+ S+
Sbjct: 318 DFSQ 321
>SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 275
Score = 29.1 bits (62), Expect = 0.42
Identities = 20/68 (29%), Positives = 37/68 (54%), Gaps = 6/68 (8%)
Frame = +1
Query: 19 KKEDLEREFDKYGKLNSVWVAL----NPPGFAFIEFENLQEAEDACSAMNG--TEMLGVT 180
+ +L EF+ +G L + + FAF+E+E+ ++AEDA ++G E G
Sbjct: 19 RARELAYEFEPFGPLIRCDIPIPRTRTSRPFAFVEYEDSRDAEDAYYEVHGRRLERGGGV 78
Query: 181 LKVEISRK 204
L+VE +++
Sbjct: 79 LRVEWAKQ 86
>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 28.7 bits (61), Expect = 0.56
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +1
Query: 94 GFAFIEFENLQEAEDACSAMNGTEMLGVTLKVE 192
GF F+ F N ++ A MNG ++ +TL V+
Sbjct: 259 GFGFVSFANAEDQSRAIEEMNGKQVGDLTLVVK 291
Score = 27.1 bits (57), Expect = 1.7
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +1
Query: 82 LNPPGFAFIEFENLQEAEDACSAMNG 159
L P G AF+ F N ++ + A +NG
Sbjct: 86 LVPSGIAFVTFNNQEDVDKAIETLNG 111
>SPCC1223.08c |dfr1||dihydrofolate reductase
Dfr1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 461
Score = 27.5 bits (58), Expect = 1.3
Identities = 13/26 (50%), Positives = 18/26 (69%)
Frame = +1
Query: 7 SARGKKEDLEREFDKYGKLNSVWVAL 84
+A KE++E EF+ YGK + V VAL
Sbjct: 430 AASSNKEEVEIEFELYGKNDDVNVAL 455
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 27.1 bits (57), Expect = 1.7
Identities = 10/37 (27%), Positives = 22/37 (59%)
Frame = +1
Query: 94 GFAFIEFENLQEAEDACSAMNGTEMLGVTLKVEISRK 204
G+A++ F N+++ E A +N T + G ++ S++
Sbjct: 122 GYAYVNFHNMEDGEKALDELNYTLIKGRPCRIMWSQR 158
>SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 26.6 bits (56), Expect = 2.2
Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 5/64 (7%)
Frame = +1
Query: 25 EDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACSAMNGTEMLGVTLKV 189
E+L+ F G +N V + + P GFA+IEF +A +NG+ + LKV
Sbjct: 69 EELQSHFASCGSVNRVTILCDKFTGHPKGFAYIEFSEPSLVPNAL-LLNGSMLHERPLKV 127
Query: 190 EISR 201
R
Sbjct: 128 TPKR 131
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 26.6 bits (56), Expect = 2.2
Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
Frame = -1
Query: 191 STFKVTPNISVPFIALHASSASCKFSNSMKAKPGGFSATQTEF---SFPYLSNSRSRSS 24
ST KVT + S+P + + +S + S S+ + + T F S + SN + SS
Sbjct: 629 STSKVTSSTSIPLTSTNRTSTTFTSSTSISTSSSSTATSSTSFASESSSFYSNVTTSSS 687
>SPBC1773.09c |mug184||meiotically upregulated gene
Mug184|Schizosaccharomyces pombe|chr 2|||Manual
Length = 551
Score = 25.8 bits (54), Expect = 3.9
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = -1
Query: 122 KFSNSMKAKPGGFSATQTEFSFPYLSNSRSRSSFLPR 12
KF++S K F+ T+TE S PY + + S P+
Sbjct: 280 KFNSSFKTSNDFFTFTKTEESSPYSFSFKLEDSNTPK 316
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 25.4 bits (53), Expect = 5.2
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = -1
Query: 77 TQTEFSFPYLSNSRSRS 27
T+ +FPYL NSR+RS
Sbjct: 329 TEYRIAFPYLYNSRARS 345
>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 2493
Score = 25.0 bits (52), Expect = 6.8
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = -2
Query: 142 THLPPPASSQIL*KRNLGDLVLPKLSLVF 56
THL S L ++ L +LV+P ++L+F
Sbjct: 1156 THLQSEESESQLREKILANLVMPNITLIF 1184
>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1275
Score = 24.6 bits (51), Expect = 9.0
Identities = 16/62 (25%), Positives = 27/62 (43%)
Frame = -1
Query: 200 LEISTFKVTPNISVPFIALHASSASCKFSNSMKAKPGGFSATQTEFSFPYLSNSRSRSSF 21
L S F T S PF++ ++++ +FS S P ++ + S SR+
Sbjct: 44 LSFSDFSTTRLFSPPFLSKRSNNSPHRFSYSPPQHPASINSRRVASYTVQSSPSRTTYRQ 103
Query: 20 LP 15
LP
Sbjct: 104 LP 105
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,496,621
Number of Sequences: 5004
Number of extensions: 23144
Number of successful extensions: 93
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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