Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS318F11f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual    26   3.9  
SPAC1851.02 |||1-acylglycerol-3-phosphate O-acyltransferase|Schi...    25   5.2  
SPAC23D3.12 |||inorganic phosphate transporter |Schizosaccharomy...    25   9.0  

>SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1496

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 5/29 (17%)
 Frame = +3

Query: 381 FVKQRIA-----RGNIRYIWTSGRKCNFA 452
           ++KQR++      G IR IW  G+KC+ A
Sbjct: 147 YLKQRVSFIGDVPGEIRCIWRKGKKCHSA 175


>SPAC1851.02 |||1-acylglycerol-3-phosphate
           O-acyltransferase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 279

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
 Frame = +2

Query: 2   RSLRTDYIK--AARARRSRSPQVRASVFHSLHQHYRDEPALLP 124
           RS R+D I+  A  ARR R   +   VF    + Y  +P LLP
Sbjct: 152 RSRRSDAIQLFAKAARRMRKENISIWVFAEGTRSYSLKPCLLP 194


>SPAC23D3.12 |||inorganic phosphate transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 559

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +2

Query: 302 GLAGRKEHLPQALHG 346
           GL G+K H P  +HG
Sbjct: 77  GLEGKKPHYPSGIHG 91


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,279,456
Number of Sequences: 5004
Number of extensions: 47060
Number of successful extensions: 125
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)