Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS318F10f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0771 + 11041882-11042073,11042669-11042851,11042946-110430...    29   1.7  
03_06_0557 + 34704990-34705400,34706271-34706485,34707142-347073...    28   4.0  
01_01_0210 - 1801335-1802138                                           28   4.0  

>03_02_0771 +
           11041882-11042073,11042669-11042851,11042946-11043020,
           11043089-11043283,11043380-11043478,11044189-11044352,
           11045676-11045742,11045842-11045894,11046287-11046413,
           11047439-11047627,11048201-11048287,11048411-11048565,
           11048814-11048933,11049043-11049268,11049729-11049788,
           11049877-11050050,11050138-11050247,11050417-11050582
          Length = 813

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 12/19 (63%), Positives = 12/19 (63%)
 Frame = +1

Query: 358 LLAPRERKRHIHSRPGSNW 414
           L AP ER  HIH RP  NW
Sbjct: 599 LSAPYERASHIHERPVVNW 617


>03_06_0557 +
           34704990-34705400,34706271-34706485,34707142-34707367,
           34707447-34707532,34708030-34708121,34708232-34708471,
           34709455-34709750
          Length = 521

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 15/23 (65%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
 Frame = +3

Query: 306 DLSARFITFHCLAWYS-DITSTT 371
           DL A F+TFHCLA  S D  STT
Sbjct: 327 DLDACFLTFHCLATPSKDSDSTT 349


>01_01_0210 - 1801335-1802138
          Length = 267

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -1

Query: 188 SSAWYNTNQKRHGQRVHTREASVLIKY 108
           +SA Y T  + HG+R+H   A+ L +Y
Sbjct: 208 ASAPYVTTDEHHGRRIHASSAASLARY 234


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,543,571
Number of Sequences: 37544
Number of extensions: 234903
Number of successful extensions: 486
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 480
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 486
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)