Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS318F09f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase Ppk30|Schizos...    29   0.42 
SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit C...    28   0.73 
SPCC16A11.13 |usp106|luc7|U1 snRNP-associated protein Usp106|Sch...    27   1.3  
SPAC1565.01 |||conserved fungal protein|Schizosaccharomyces pomb...    27   2.2  
SPCC1450.11c |cek1||serine/threonine protein kinase Cek1|Schizos...    26   3.0  
SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter family|Sch...    25   5.2  
SPBC21H7.05 |sfc6||transcription factor TFIIIC complex subunit S...    25   9.0  
SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein Bms1|Schizosacc...    25   9.0  

>SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase
           Ppk30|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 953

 Score = 29.1 bits (62), Expect = 0.42
 Identities = 19/50 (38%), Positives = 25/50 (50%)
 Frame = -2

Query: 331 QPATGGRLNPRSSPKKWHTTLTIRPKTRTKTIDLPSRNRPQLTL*KNSVS 182
           Q    G L P SS +  HT+L   P  +T + ++P  NRP L     SVS
Sbjct: 354 QRTPSGSLTPLSS-RPAHTSLPPIPTVQTTSSNVPPVNRPSLKSKSPSVS 402


>SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit
           Cct2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 527

 Score = 28.3 bits (60), Expect = 0.73
 Identities = 17/50 (34%), Positives = 24/50 (48%)
 Frame = -3

Query: 285 NGIQRLPLDRKHEPKPSIFHPETVRN*RCKKIQSQLRTVQDQTKKVSIEA 136
           +GI+RL L    E   +  HPE V+   CKKI+  +       K   +EA
Sbjct: 314 DGIERLSLVTGGEIASTFDHPELVKLGHCKKIEEIIIGEDKMIKFSGVEA 363


>SPCC16A11.13 |usp106|luc7|U1 snRNP-associated protein
           Usp106|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 264

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 13/41 (31%), Positives = 24/41 (58%)
 Frame = +3

Query: 375 VRVVGRDLLAKLEDSQSHGDNEGEERQLKSVPSLQTEDTDS 497
           +R + RDL A+LED +   D +  E+Q  ++ S + + + S
Sbjct: 221 LRNIARDLRAQLEDREKSRDKKDGEKQRDNLASFEDKISTS 261


>SPAC1565.01 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 242

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = -1

Query: 338 YAATRHRRETEPQELAQEMAY 276
           YAA+R+R +T PQ+L Q   Y
Sbjct: 125 YAASRNRYDTAPQKLIQARMY 145


>SPCC1450.11c |cek1||serine/threonine protein kinase
           Cek1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1338

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 2/66 (3%)
 Frame = -1

Query: 347 DAAYAATRHRRETEP--QELAQEMAYNAYH*TENTNQNHRSSIPKPSATDAVKKFSLNCE 174
           +A Y + R R E +   QE+  ++  N      +T+  H  S   PS T      +L  E
Sbjct: 383 NAIYYSERIRLEIDHHVQEIIDDVVSNLVTNHSSTSLGHLESKLAPSITFPDACDALEAE 442

Query: 173 RCKTRP 156
            C TRP
Sbjct: 443 ECITRP 448


>SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 791

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 9/33 (27%), Positives = 19/33 (57%)
 Frame = -1

Query: 518 AMTLIPLAIGVLGLKAWNALQLSFFSFVVSVAL 420
           A  ++ L +G    + W+ +Q+  + FVVS+ +
Sbjct: 478 ASIIVSLGLGFAFTEGWHDIQIRSYGFVVSMVI 510


>SPBC21H7.05 |sfc6||transcription factor TFIIIC complex subunit
           Sfc6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 582

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = +1

Query: 442 EKKDS*RAFQAFRPRTPIA 498
           EK+DS R    FRPR P A
Sbjct: 515 EKQDSYRMLDGFRPRLPKA 533


>SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein
           Bms1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1121

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +3

Query: 408 LEDSQSHGDNEGEERQLKSVPSLQTEDTD 494
           LED ++  DNE EE    SV +   E  D
Sbjct: 622 LEDEENSSDNEMEESSGSSVTAENEESAD 650


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,142,902
Number of Sequences: 5004
Number of extensions: 44462
Number of successful extensions: 141
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)