Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS318F09f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    26   0.27 
EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholi...    25   0.62 
EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholi...    25   0.62 
EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholi...    25   0.62 
EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholi...    25   0.62 
EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholi...    25   0.62 
EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholi...    25   0.62 
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    25   0.62 
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    25   0.62 
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    25   0.62 
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    23   1.4  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    23   1.4  

>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 25.8 bits (54), Expect = 0.27
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = -1

Query: 233 SSIPKPSATDAVKKFSLNCERCKTRPKR 150
           S+IP+PS   A+  + ++C  C   P++
Sbjct: 371 SAIPEPSKNPAMGHWQMSCVACSPPPRQ 398


>EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 6 protein.
          Length = 461

 Score = 24.6 bits (51), Expect = 0.62
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = +3

Query: 231 RSMVLVRVFGLMVSVVCHFLGELLGFSLPPVAG 329
           R   L   F L+V  V      LLGF+LPP +G
Sbjct: 191 RRRTLYYFFNLIVPCVLISSMALLGFTLPPDSG 223


>EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 5 protein.
          Length = 461

 Score = 24.6 bits (51), Expect = 0.62
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = +3

Query: 231 RSMVLVRVFGLMVSVVCHFLGELLGFSLPPVAG 329
           R   L   F L+V  V      LLGF+LPP +G
Sbjct: 191 RRRTLYYFFNLIVPCVLISSMALLGFTLPPDSG 223


>EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 4 protein.
          Length = 461

 Score = 24.6 bits (51), Expect = 0.62
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = +3

Query: 231 RSMVLVRVFGLMVSVVCHFLGELLGFSLPPVAG 329
           R   L   F L+V  V      LLGF+LPP +G
Sbjct: 191 RRRTLYYFFNLIVPCVLISSMALLGFTLPPDSG 223


>EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 3 protein.
          Length = 461

 Score = 24.6 bits (51), Expect = 0.62
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = +3

Query: 231 RSMVLVRVFGLMVSVVCHFLGELLGFSLPPVAG 329
           R   L   F L+V  V      LLGF+LPP +G
Sbjct: 191 RRRTLYYFFNLIVPCVLISSMALLGFTLPPDSG 223


>EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 2 protein.
          Length = 461

 Score = 24.6 bits (51), Expect = 0.62
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = +3

Query: 231 RSMVLVRVFGLMVSVVCHFLGELLGFSLPPVAG 329
           R   L   F L+V  V      LLGF+LPP +G
Sbjct: 191 RRRTLYYFFNLIVPCVLISSMALLGFTLPPDSG 223


>EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 1 protein.
          Length = 461

 Score = 24.6 bits (51), Expect = 0.62
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = +3

Query: 231 RSMVLVRVFGLMVSVVCHFLGELLGFSLPPVAG 329
           R   L   F L+V  V      LLGF+LPP +G
Sbjct: 191 RRRTLYYFFNLIVPCVLISSMALLGFTLPPDSG 223


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 24.6 bits (51), Expect = 0.62
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = +3

Query: 231 RSMVLVRVFGLMVSVVCHFLGELLGFSLPPVAG 329
           R   L   F L+V  V      LLGF+LPP +G
Sbjct: 259 RRRTLYYFFNLIVPCVLISSMALLGFTLPPDSG 291


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 24.6 bits (51), Expect = 0.62
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = +3

Query: 231 RSMVLVRVFGLMVSVVCHFLGELLGFSLPPVAG 329
           R   L   F L+V  V      LLGF+LPP +G
Sbjct: 259 RRRTLYYFFNLIVPCVLISSMALLGFTLPPDSG 291


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 24.6 bits (51), Expect = 0.62
 Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 3/53 (5%)
 Frame = -1

Query: 305 PQELAQEMAYN---AYH*TENTNQNHRSSIPKPSATDAVKKFSLNCERCKTRP 156
           P+E  Q +      +Y  T NT+ N +  IP+ S        SL  E  +T P
Sbjct: 710 PKESTQSLTTTGNVSYLTTNNTSNNSQLQIPRASLVSTTSVKSLRLEGDETPP 762


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -1

Query: 488 VLGLKAWNALQLSFFSFVVSVALAIF 411
           +LG++    + L+F+SF+VS  L  F
Sbjct: 382 LLGIQCLTVVCLAFWSFIVSTILLWF 407


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +3

Query: 231 RSMVLVRVFGLMVSVVCHFLGELLGFSLPPVAG 329
           R   L   F L+V  V      +LGF+LPP +G
Sbjct: 228 RRRTLYYFFNLIVPCVLIASMAVLGFTLPPDSG 260


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 145,329
Number of Sequences: 438
Number of extensions: 3128
Number of successful extensions: 12
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)