Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS318F08f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po...    27   1.7  
SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|c...    27   1.7  
SPAC19A8.08 |upf2||nonsense-mediated decay protein Upf2|Schizosa...    27   2.2  
SPCC364.01 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    27   2.2  
SPAC20H4.10 |ufd2||ubiquitin-protein ligase E4 |Schizosaccharomy...    27   2.2  
SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual    26   3.9  
SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase Ogm2|Schizo...    25   5.2  

>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1014

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 16/56 (28%), Positives = 26/56 (46%)
 Frame = +3

Query: 18   MSKIPILINNFCKRNISVTATREGKRNFRKFVIPNKRGSVLHKKKQMTEDREFEID 185
            M  +P  +N+      +    R G R F+ F   N   S ++ KK   +D+E +ID
Sbjct: 948  MHNVPSSMNHSDYNTSATRPRRLGSRTFQGF---NSNHSNINSKKDDLDDKEMQID 1000


>SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1142

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 16/54 (29%), Positives = 27/54 (50%)
 Frame = +3

Query: 36  LINNFCKRNISVTATREGKRNFRKFVIPNKRGSVLHKKKQMTEDREFEIDKRGV 197
           L + F KRN + TA+ + K N  +  IP+   S       ++ ++E +I K  V
Sbjct: 21  LSSGFYKRNNANTASNDEKPNLEQNDIPSVTSSGSSTPSSISIEKEIKISKGNV 74


>SPAC19A8.08 |upf2||nonsense-mediated decay protein
           Upf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1049

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 12/36 (33%), Positives = 22/36 (61%)
 Frame = +3

Query: 96  NFRKFVIPNKRGSVLHKKKQMTEDREFEIDKRGVRD 203
           N   FV P KRG ++ KKK + E+  +++ +  ++D
Sbjct: 626 NALHFVNPPKRGIIVSKKKSLKEEFLYDLIQIRLKD 661


>SPCC364.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 320

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 16/46 (34%), Positives = 26/46 (56%)
 Frame = +1

Query: 370 VRKLLPILNKEN*MRKVIQ*NRLKRSH*SLRKPLFVQNKLAQIYFN 507
           ++K   I+ K+   RK+++   LKR   SL + L  +N + QI FN
Sbjct: 43  LQKAAEIVQKQKENRKILKDVSLKRLSKSLDRSLPSENTIDQISFN 88


>SPAC20H4.10 |ufd2||ubiquitin-protein ligase E4 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1010

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 2/54 (3%)
 Frame = -1

Query: 401 SLFKIGNNFLTVHSIE*LRRCKFTLNDI--SGFV*NIWFQIKIF*VWYDNFWNH 246
           SLFK  ++ LT+HS+E L  C+F ++ +  + ++ N + + K+  + Y     H
Sbjct: 596 SLFKTSSSTLTLHSLEPL--CEFCVSFLTQANYIKNPYLRAKLAEILYFGVQTH 647


>SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1496

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 14/23 (60%), Positives = 14/23 (60%)
 Frame = +1

Query: 133  LYFTKKNK*PRIGNLKSTNEELE 201
            L FTK NK     NLK T EELE
Sbjct: 1423 LSFTKSNKSTLNPNLKETAEELE 1445


>SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase
           Ogm2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 739

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = -1

Query: 155 LFFFVKYRTSLVWYHKFSKIPFTF 84
           LFF +     L  YH + K PFTF
Sbjct: 200 LFFIISTFFCLSRYHVYHKAPFTF 223


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,940,037
Number of Sequences: 5004
Number of extensions: 36804
Number of successful extensions: 91
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)