Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS318F08f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0811 - 7440413-7440712,7441285-7441398,7441448-7441705,744...    27   6.9  
02_03_0138 - 15629421-15629440,15629521-15629752,15630115-156303...    27   9.1  
01_05_0147 + 18597194-18597643,18598347-18598681,18600073-186001...    27   9.1  

>12_01_0811 -
           7440413-7440712,7441285-7441398,7441448-7441705,
           7441825-7441998,7442344-7442514,7442607-7442874,
           7443171-7443937,7444437-7445123
          Length = 912

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
 Frame = +3

Query: 45  NFCKRNISVTATREGKRNFRKFV-IPNKRGSVLHKKKQMTEDREFEIDKRGV 197
           NF +R  S T T +  +N R  + +P+  GSV++KK    ++   E+D + +
Sbjct: 319 NFGERTYS-TLTSDRAKNMRYSMRVPDFSGSVINKKVDSQKEEVKEVDSQDI 369


>02_03_0138 -
           15629421-15629440,15629521-15629752,15630115-15630348,
           15630486-15630709,15631225-15631509,15631549-15631690
          Length = 378

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = +3

Query: 42  NNFCKRNIS-VTATREGKRNFRKFVIPNKRGSVLHKKKQ 155
           +N+ +R  + +   R+GKR   K  IP K+GS   K+K+
Sbjct: 340 SNYSRRTRTWIDKLRKGKRKNPKCTIPTKKGSKETKEKE 378


>01_05_0147 +
           18597194-18597643,18598347-18598681,18600073-18600147,
           18600325-18600427,18601554-18601642,18602953-18603064,
           18604093-18604146,18604271-18604319,18606236-18606347,
           18606389-18606436,18607000-18607327
          Length = 584

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 16/66 (24%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
 Frame = +3

Query: 9   KPKMSKIPILIN-NFCKRNISVTATREGKRNFRKFVIPNKRGSVLHKKKQMTEDREFEID 185
           K +  K+ +L++ + C    +  A  +    F+    P KRG +  K K+  E  +FE++
Sbjct: 349 KKRYWKLSLLVHPDKCPHPSAQEAFVKLNNAFKDLQDPEKRGVIDEKIKKKEEMEQFEVE 408

Query: 186 KRGVRD 203
            + +R+
Sbjct: 409 LKAMRE 414


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,633,677
Number of Sequences: 37544
Number of extensions: 179849
Number of successful extensions: 315
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 312
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 315
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)