Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS318F08f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          23   1.4  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      23   1.4  
AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.          23   1.4  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   7.7  

>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
 Frame = -1

Query: 149 FFVKYRTSLVWYHKFSK-IP-FTFSSRRYRNVSFTEI 45
           FF  Y+T L +YHK+ + +P +T     +  VS   +
Sbjct: 417 FFSIYKTILDYYHKYKENLPKYTTEELNFPGVSIESV 453


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
 Frame = -1

Query: 149 FFVKYRTSLVWYHKFSK-IP-FTFSSRRYRNVSFTEI 45
           FF  Y+T L +YHK+ + +P +T     +  VS   +
Sbjct: 417 FFSIYKTILDYYHKYKENLPKYTTEELNFPGVSIESV 453


>AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.
          Length = 226

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
 Frame = -1

Query: 149 FFVKYRTSLVWYHKFSK-IP-FTFSSRRYRNVSFTEI 45
           FF  Y+T L +YHK+ + +P +T     +  VS   +
Sbjct: 43  FFSIYKTILDYYHKYKENLPKYTTEELNFPGVSIESV 79


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
            protein.
          Length = 1124

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = +1

Query: 454  SLRKPLFVQNKLAQIYFNL 510
            +  +PL V ++L Q+Y +L
Sbjct: 1033 NFNQPLLVNDQLGQLYLDL 1051


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 131,172
Number of Sequences: 438
Number of extensions: 2756
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)