Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS318F07f
         (366 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY818713-1|AAX35669.1|  691|Caenorhabditis elegans LIN-65S protein.    26   9.5  
AY818712-1|AAX35668.1|  728|Caenorhabditis elegans LIN-65L protein.    26   9.5  
AC025726-22|AAN73851.2|  512|Caenorhabditis elegans Abnormal cel...    26   9.5  
AC025726-21|AAK73935.3|  728|Caenorhabditis elegans Abnormal cel...    26   9.5  

>AY818713-1|AAX35669.1|  691|Caenorhabditis elegans LIN-65S protein.
          Length = 691

 Score = 25.8 bits (54), Expect = 9.5
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -1

Query: 342 VPGPPSSSXFAXXXPDQVATK 280
           VP P SSS F+   P Q+AT+
Sbjct: 460 VPSPQSSSAFSRPPPTQLATQ 480


>AY818712-1|AAX35668.1|  728|Caenorhabditis elegans LIN-65L protein.
          Length = 728

 Score = 25.8 bits (54), Expect = 9.5
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -1

Query: 342 VPGPPSSSXFAXXXPDQVATK 280
           VP P SSS F+   P Q+AT+
Sbjct: 497 VPSPQSSSAFSRPPPTQLATQ 517


>AC025726-22|AAN73851.2|  512|Caenorhabditis elegans Abnormal cell
           lineage protein 65,isoform b protein.
          Length = 512

 Score = 25.8 bits (54), Expect = 9.5
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -1

Query: 342 VPGPPSSSXFAXXXPDQVATK 280
           VP P SSS F+   P Q+AT+
Sbjct: 436 VPSPQSSSAFSRPPPTQLATQ 456


>AC025726-21|AAK73935.3|  728|Caenorhabditis elegans Abnormal cell
           lineage protein 65,isoform a protein.
          Length = 728

 Score = 25.8 bits (54), Expect = 9.5
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -1

Query: 342 VPGPPSSSXFAXXXPDQVATK 280
           VP P SSS F+   P Q+AT+
Sbjct: 497 VPSPQSSSAFSRPPPTQLATQ 517


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,087,103
Number of Sequences: 27780
Number of extensions: 41722
Number of successful extensions: 102
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 514188384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)