Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS318F04f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC30.02c |||RNA polymerase II elongator complex subunit|Schizo...    28   0.73 
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha...    28   0.97 
SPBC106.20 |exo70|SPBC582.02|exocyst complex subunit Exo70 |Schi...    25   9.0  

>SPAC30.02c |||RNA polymerase II elongator complex
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 281

 Score = 28.3 bits (60), Expect = 0.73
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = +3

Query: 183 LQKYTFYQLGTLVFFKGFHYTIYC**ESKEKF 278
           L K TF     L + KGF Y +YC  ESK  +
Sbjct: 77  LSKSTFVICDALNYIKGFRYQLYC--ESKSMY 106


>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
           Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 884

 Score = 27.9 bits (59), Expect = 0.97
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +3

Query: 366 TECKMAAFALDCVFTMNYSQYTKSIQG*LGKQIYYFS*FS 485
           ++ K++     C FT  YS +T +I      +IYY + FS
Sbjct: 824 SDSKLSCSKYMCSFTFIYSDFTSNITNNYRPRIYYLAQFS 863


>SPBC106.20 |exo70|SPBC582.02|exocyst complex subunit Exo70
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 615

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
 Frame = -2

Query: 334 FYFYYL--DFNKNTRNHIRFGNFSLDSY 257
           FY  Y+  DF KN   +I+F    LDS+
Sbjct: 579 FYDKYINSDFTKNKDKYIKFTKADLDSF 606


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,031,200
Number of Sequences: 5004
Number of extensions: 37561
Number of successful extensions: 60
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 60
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)