Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS318F04f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          23   2.5  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      23   2.5  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    21   5.8  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    21   7.7  

>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = +3

Query: 342 LNRGFNALTECKMAAFALDCVFTMN 416
           LN G N +T       +LDC FTMN
Sbjct: 550 LNSGLNKITRN-----SLDCFFTMN 569


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = +3

Query: 342 LNRGFNALTECKMAAFALDCVFTMN 416
           LN G N +T       +LDC FTMN
Sbjct: 550 LNSGLNKITRN-----SLDCFFTMN 569


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 10/35 (28%), Positives = 19/35 (54%)
 Frame = -1

Query: 515 VHFIHQENQSAELAEIIYLFTELTLNTFCVL*IVH 411
           V+ I + + +  +  ++ +F   T +T C L IVH
Sbjct: 479 VNIIVKGDVAGSVEALLDIFDTYTYDTICQLNIVH 513


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 7/23 (30%), Positives = 13/23 (56%)
 Frame = +1

Query: 433 KVFRVNSVNKYIISASSADWFSW 501
           K+   +   +  ++ SSA WF+W
Sbjct: 596 KLANTDGTEEDALNLSSAVWFAW 618


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 136,656
Number of Sequences: 438
Number of extensions: 2277
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)