Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS318F02f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0011 + 19245742-19246440,19248361-19249170                       31   0.74 
03_02_0090 - 5564326-5567280                                           29   3.0  
06_01_0142 + 1079053-1079700                                           28   5.2  
12_02_0339 - 17721664-17722407,17722921-17723556                       27   9.1  
05_07_0081 - 27572047-27572925,27573285-27573419                       27   9.1  

>11_06_0011 + 19245742-19246440,19248361-19249170
          Length = 502

 Score = 30.7 bits (66), Expect = 0.74
 Identities = 16/41 (39%), Positives = 23/41 (56%)
 Frame = +3

Query: 222 ENKIAADYIVSELIDNEGTDVHREQSDALDPVWRIVNKYYR 344
           +N + +D  V++L ++   DV  E   ALD V R VN Y R
Sbjct: 399 QNAVGSDKAVAKLFNSISKDVVLEPESALDGVQRQVNAYCR 439


>03_02_0090 - 5564326-5567280
          Length = 984

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 13/19 (68%), Positives = 14/19 (73%)
 Frame = -2

Query: 508 WAATTHTSADTPAARRCGT 452
           +AATTH SA TPAA   GT
Sbjct: 153 FAATTHQSAPTPAAAAVGT 171


>06_01_0142 + 1079053-1079700
          Length = 215

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = +3

Query: 303 ALDPVWRIVNKYYRADVRVH-TRLDGEP 383
           A +P WR   +Y   DV++H T  DGEP
Sbjct: 84  AANPGWRAAVEYRGFDVKLHYTPFDGEP 111


>12_02_0339 - 17721664-17722407,17722921-17723556
          Length = 459

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 15/40 (37%), Positives = 19/40 (47%)
 Frame = +3

Query: 225 NKIAADYIVSELIDNEGTDVHREQSDALDPVWRIVNKYYR 344
           N + +D  V+ +      DV  E   ALD V R VN Y R
Sbjct: 369 NTLGSDKAVARMFSGLSRDVVLEPRSALDGVHREVNAYCR 408


>05_07_0081 - 27572047-27572925,27573285-27573419
          Length = 337

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = -2

Query: 379 SPSSRV*TRTSAL*YLFTILHTGSNASLCSR-CTSVPSLSIS 257
           SP++   +R SA   LF  +H  S +  CSR C+ + + SIS
Sbjct: 260 SPATTHLSRDSASGVLFACMHGHSCSQWCSRVCSGIATYSIS 301


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,716,005
Number of Sequences: 37544
Number of extensions: 221711
Number of successful extensions: 543
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 536
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 543
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)