Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS318E03f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein pro...    40   1e-05
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    34   8e-04
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    23   1.9  
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    21   5.8  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   5.8  

>L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein
           protein.
          Length = 74

 Score = 40.3 bits (90), Expect = 1e-05
 Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
 Frame = +1

Query: 268 KVHQCPDCNKKFVHDSTLKAHSFVHE-PIPYVC-HCGVAYYKSCDLKDHKKL 417
           K  +CP+C+K+F  D  LK H  +H    PY C HC   + +  +L+ H ++
Sbjct: 8   KPFECPECHKRFTRDHHLKTHMRLHTGEKPYHCSHCDRQFVQVANLRRHLRV 59


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 34.3 bits (75), Expect = 8e-04
 Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
 Frame = +1

Query: 274 HQCPDCNKKFVHDSTLKAHSFVHE-PIPYVCH-CGVAYYKSCDLKDHKK 414
           H+C  C+K F+    L  H   H    PYVC  CG  +  S  LK H +
Sbjct: 176 HKCTVCSKTFIQSGQLVIHMRTHTGEKPYVCKACGKGFTCSKQLKVHTR 224



 Score = 29.9 bits (64), Expect = 0.017
 Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
 Frame = +1

Query: 268 KVHQCPDCNKKFVHDSTLKAHSFVH-EPIPYVCH-CGVAYYKSCDLKDHKKL 417
           K +QC  C+K F     L  H  +H +  PY C  C  A+  S  L  H ++
Sbjct: 118 KPYQCEYCSKSFSVKENLSVHRRIHTKERPYKCDVCERAFEHSGKLHRHMRI 169



 Score = 29.1 bits (62), Expect = 0.029
 Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
 Frame = +1

Query: 268 KVHQCPDCNKKFVHDSTLKAHSFVHE-PIPYVCH-CGVAYYKSCDLKDHK 411
           K + C  C K F     LK H+  H    PY C  CG ++  +  LK H+
Sbjct: 202 KPYVCKACGKGFTCSKQLKVHTRTHTGEKPYTCDICGKSFGYNHVLKLHQ 251



 Score = 25.0 bits (52), Expect = 0.47
 Identities = 13/49 (26%), Positives = 21/49 (42%), Gaps = 2/49 (4%)
 Frame = +1

Query: 274 HQCPDCNKKFVHDSTLKAHSFVHE-PIPYVCH-CGVAYYKSCDLKDHKK 414
           ++C  C + F H   L  H  +H    P+ C  C   + +S  L  H +
Sbjct: 148 YKCDVCERAFEHSGKLHRHMRIHTGERPHKCTVCSKTFIQSGQLVIHMR 196



 Score = 24.6 bits (51), Expect = 0.62
 Identities = 9/25 (36%), Positives = 12/25 (48%)
 Frame = +1

Query: 268 KVHQCPDCNKKFVHDSTLKAHSFVH 342
           K + C  C K F ++  LK H   H
Sbjct: 230 KPYTCDICGKSFGYNHVLKLHQVAH 254


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = +2

Query: 68  KAYPLSRKQWHN 103
           K YPL   QWHN
Sbjct: 68  KNYPLDVDQWHN 79


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 7/12 (58%), Positives = 7/12 (58%)
 Frame = +2

Query: 68  KAYPLSRKQWHN 103
           K YP    QWHN
Sbjct: 67  KNYPFDVDQWHN 78


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 7/22 (31%), Positives = 12/22 (54%)
 Frame = +3

Query: 72  HIRCRENNGTITPRS*GSVRSC 137
           H +CR  N ++TP +    + C
Sbjct: 433 HFQCRYPNASVTPYNKNYTKFC 454


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 128,860
Number of Sequences: 438
Number of extensions: 2401
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)