Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS318E02f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3E7.06c |||membrane transporter|Schizosaccharomyces pombe|ch...    27   1.7  
SPAC24H6.04 |hxk1||hexokinase 1 |Schizosaccharomyces pombe|chr 1...    26   3.0  
SPAC31G5.05c |||ribulose phosphate 3-epimerase |Schizosaccharomy...    25   5.2  
SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster ...    25   5.2  
SPAC1399.05c |||transcription factor, zf-fungal binuclear cluste...    25   6.8  
SPCC13B11.04c ||SPCC777.01c|glutathione-dependent formaldehyde d...    25   9.0  

>SPBC3E7.06c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 577

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = -3

Query: 264 ILG*TVSYIFAEVDELRLLQWI*FGYSWSCLLYWGFFGRFC 142
           I+  T + I AE  +   + W    Y  SC  +   FG+FC
Sbjct: 108 IVASTYTKIGAEFGKFSQVSWTATAYMISCTAFQPLFGKFC 148


>SPAC24H6.04 |hxk1||hexokinase 1 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 484

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +1

Query: 238 YVADCLPKYVQKVQLTAGNELEV 306
           Y+ADC+ K+V++V       LE+
Sbjct: 133 YIADCIKKFVEEVHPGKSQNLEI 155


>SPAC31G5.05c |||ribulose phosphate 3-epimerase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 228

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 4/39 (10%)
 Frame = +1

Query: 157 KTPVQETRPTVAKLDPLQKAQLVDFGK----YVADCLPK 261
           KTPV+   P V KLD +     V+ GK    ++ +CLPK
Sbjct: 122 KTPVEVILPFVEKLD-MVLVMTVEPGKGGQSFMPECLPK 159


>SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 827

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +1

Query: 130 QRVATKSTEKTPVQETRPTVAKLDPL 207
           Q +A  ST   PVQE+  + ++ DPL
Sbjct: 151 QNIARNSTVPNPVQESNSSSSQPDPL 176


>SPAC1399.05c |||transcription factor, zf-fungal binuclear cluster
           type|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 529

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = +1

Query: 442 ILSLRYNARIRVKTYTDELTPVD 510
           +++LR+N  ++ + YTD L  VD
Sbjct: 170 LIALRHNPSLKARIYTDVLNIVD 192


>SPCC13B11.04c ||SPCC777.01c|glutathione-dependent formaldehyde
           dehydrogenase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 380

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 9/27 (33%), Positives = 12/27 (44%)
 Frame = -1

Query: 245 ATYLPKSTSCAFCSGSNLATVGRVSCT 165
           A Y P+  +C FC        GR+  T
Sbjct: 96  ALYTPECKTCKFCKSGKTNLCGRIRTT 122


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,139,339
Number of Sequences: 5004
Number of extensions: 44236
Number of successful extensions: 104
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)