Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS318D08f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4F6.05c |||lectin |Schizosaccharomyces pombe|chr 2|||Manual        27   2.2  
SPBC18E5.11c |edc3|SPBC23G7.01c|enhancer of mRNA decapping Edc3 ...    26   3.0  
SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyce...    25   5.2  
SPAC10F6.12c |mam4||protein-S isoprenylcysteine O-methyltransfer...    25   6.8  
SPCC1259.11c |gyp2||GTPase activating protein Gyp2 |Schizosaccha...    25   6.8  
SPBC1198.07c |||mannan endo-1,6-alpha-mannosidase |Schizosacchar...    25   9.0  

>SPBC4F6.05c |||lectin |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 384

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = -1

Query: 503 YGSLRR*RGYIRLTFSDSKEAR 438
           YGS+    GY+ LT  DS EAR
Sbjct: 42  YGSVDEDSGYVYLTSKDSNEAR 63


>SPBC18E5.11c |edc3|SPBC23G7.01c|enhancer of mRNA decapping Edc3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 454

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +1

Query: 280 IFPSKSNGHIIKGNKKKSR 336
           +  S SNGH+  G+KK SR
Sbjct: 171 VLSSSSNGHVTPGSKKGSR 189


>SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 973

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +1

Query: 214 YFIYTMGSFNTYIQKYILKFSNIFPSKSNGHII 312
           +FI  +GS+  Y++K  +   N   SK +G +I
Sbjct: 843 FFIKILGSYRNYLRKPHMSRENFGISKGSGGLI 875


>SPAC10F6.12c |mam4||protein-S isoprenylcysteine O-methyltransferase
           Mam4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 236

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +2

Query: 329 KVAY*INFDNLLVNRLFRHYMQSFVSFICI 418
           KV   + F + L+N +F  Y  S + F+C+
Sbjct: 98  KVINCLRFPSFLINFIFSVYQTSALGFLCL 127


>SPCC1259.11c |gyp2||GTPase activating protein Gyp2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 720

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -2

Query: 463 PLATVKKLEKLKVENDAYEAD 401
           PLA V+KLE+   +ND +  D
Sbjct: 74  PLAAVRKLERENSDNDTFTFD 94


>SPBC1198.07c |||mannan endo-1,6-alpha-mannosidase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 507

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 19/85 (22%), Positives = 38/85 (44%)
 Frame = +2

Query: 86  VQYQF*KRN*VYIYKSCNKNEIGVGWRIFSGLRFFLTEITYITILFILWDHLTLIFKSIF 265
           V++Q    N  Y YK+   N  G+ +++ + L  +    TY+ +   +WD  T +     
Sbjct: 223 VRWQIYSFNNGYSYKNSISN--GILFQLAARLARYTNNDTYVDLAQKVWDWSTTVGFVDL 280

Query: 266 *NFQIYFPQKVTDILSRAIKKKVAY 340
            ++ +Y    VT   S    ++ +Y
Sbjct: 281 DDYTVYDGASVTSNCSSITNEQWSY 305


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,911,641
Number of Sequences: 5004
Number of extensions: 36225
Number of successful extensions: 115
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)