Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS318D06f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    26   0.20 
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    26   0.20 
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               23   1.9  
DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex det...    22   3.3  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    22   3.3  
S78458-1|AAB34402.1|   46|Apis mellifera apamin protein.               22   4.4  
M29493-1|AAA27728.1|   74|Apis mellifera protein ( Bee homeobox-...    22   4.4  
M29488-1|AAA27723.1|   86|Apis mellifera protein ( Bee homeobox-...    22   4.4  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    22   4.4  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    22   4.4  

>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 26.2 bits (55), Expect = 0.20
 Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 3/44 (6%)
 Frame = -2

Query: 283 TDKKTSK---ICKSISNGFKQKECNGTNCCTNKTERNVEKNNEK 161
           T+++TSK   I  S+SN +K    N  N   N    N   NN K
Sbjct: 71  TERETSKEPKIISSLSNNYKYSNYNNYNNNYNNNYNNNYNNNYK 114


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 26.2 bits (55), Expect = 0.20
 Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 3/44 (6%)
 Frame = -2

Query: 283 TDKKTSK---ICKSISNGFKQKECNGTNCCTNKTERNVEKNNEK 161
           T+++TSK   I  S+SN +K    N  N   N    N   NN K
Sbjct: 71  TERETSKEPKIISSLSNNYKYSNYNNYNNNYNNNYNNNYNNNYK 114


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -2

Query: 106 DEEDSDDSEIKHQDEDDTCSSS 41
           D+++SD+  IK Q E    SSS
Sbjct: 89  DDDESDNENIKSQKEFPNSSSS 110


>DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 15/45 (33%), Positives = 19/45 (42%)
 Frame = -2

Query: 289 NITDKKTSKICKSISNGFKQKECNGTNCCTNKTERNVEKNNEKLQ 155
           N T+++ SK  K ISN          N   N    N   N +KLQ
Sbjct: 69  NRTERERSKEPKIISNNNSLSNNYNYNNNYNNYNNNYNTNYKKLQ 113


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -2

Query: 109 LDEEDSDDSEIKHQDEDDTCSSSCGRLGVG 20
           +DE+D DD +    D+DD   ++ G+   G
Sbjct: 389 VDEDDDDDGD---DDDDDDVEAANGKPAEG 415


>S78458-1|AAB34402.1|   46|Apis mellifera apamin protein.
          Length = 46

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +3

Query: 252 LLQILLVFLSVILQSSKSLTAVSKLFC 332
           +L+ + +FLSVIL +S  +T V    C
Sbjct: 4   MLRCIYLFLSVILITSYFVTPVMPCNC 30


>M29493-1|AAA27728.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H90. ).
          Length = 74

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = -1

Query: 242 WFQTKRM*WYK 210
           WFQ +RM W K
Sbjct: 55  WFQNRRMKWKK 65


>M29488-1|AAA27723.1|   86|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H55. ).
          Length = 86

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = -1

Query: 242 WFQTKRM*WYK 210
           WFQ +RM W K
Sbjct: 55  WFQNRRMKWKK 65


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -2

Query: 160 LQTVLDKYSLENNSQVRLDEEDSDDS 83
           +QTV  K  LE N  ++LD    D +
Sbjct: 65  VQTVRFKNELERNITIKLDTRAEDST 90


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = -1

Query: 242 WFQTKRM*WYK 210
           WFQ +RM W K
Sbjct: 317 WFQNRRMKWKK 327


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 130,834
Number of Sequences: 438
Number of extensions: 2655
Number of successful extensions: 12
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)