Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS318D04f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC26H8.01 |thi2|nmt2|thiazole biosynthetic enzyme|Schizosaccha...    29   0.56 
SPBC3F6.04c |||U3 snoRNP protein Nop14 |Schizosaccharomyces pomb...    26   3.0  
SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces pom...    25   5.2  
SPBC2G5.02c |||CK2 family regulatory subunit |Schizosaccharomyce...    25   9.0  

>SPBC26H8.01 |thi2|nmt2|thiazole biosynthetic
           enzyme|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 328

 Score = 28.7 bits (61), Expect = 0.56
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +3

Query: 204 T*W*VVAVTHGLQQCQGQSQAAAYRLVLSTG 296
           T W +V++ HGLQ C   +   A+ +V +TG
Sbjct: 201 TNWTLVSLNHGLQSCMDPNTINAHLVVSATG 231


>SPBC3F6.04c |||U3 snoRNP protein Nop14 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 827

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -2

Query: 442 MGSALRNCSR*YRHLVFTISSPTTGVEFIQ 353
           +GSA++N       L +T   PT+ VEF+Q
Sbjct: 392 VGSAIKNEGSEKASLAYTYPCPTSHVEFVQ 421


>SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 781

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = -1

Query: 485 SLNEYNRDIDLCMFHGECSEELFEMIPASRFYHLIAHHRSRVHP 354
           SL+ Y+  I +   + + SEE  + I  SR    IAH+    HP
Sbjct: 276 SLSAYSSLIQVMNNNYQLSEEALQYITRSRVNLWIAHYWKDFHP 319


>SPBC2G5.02c |||CK2 family regulatory subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 254

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = +2

Query: 227 HPWTSAMPGAEPSRCLPLGTLHRPRL 304
           H +  + P   P R +P G +++PR+
Sbjct: 195 HLFFESYPELNPKRSIPCGKIYQPRI 220


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,188,126
Number of Sequences: 5004
Number of extensions: 43219
Number of successful extensions: 93
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)