Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS318D04f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_01_0572 + 7404842-7405502,7405581-7406143,7406338-7406479,740... 30 1.3
06_01_0734 + 5419951-5420475 29 2.3
05_05_0022 + 21592403-21593083,21593720-21594208 29 2.3
08_01_0407 - 3613417-3613506,3613603-3613713,3613789-3613857,361... 28 4.0
02_03_0319 - 17674595-17674772,17675925-17675995 27 6.9
12_02_0996 - 25115643-25115708,25115869-25116107,25116484-251165... 27 9.1
11_08_0087 - 28271211-28271383,28271821-28271853,28271958-282720... 27 9.1
05_04_0321 + 20235221-20235628,20235874-20236839,20238313-20238405 27 9.1
04_04_1515 + 34117383-34117732,34117833-34117918,34118227-341182... 27 9.1
04_04_0824 - 28399144-28399385,28400193-28400312,28400422-284004... 27 9.1
>04_01_0572 +
7404842-7405502,7405581-7406143,7406338-7406479,
7406605-7407436,7407546-7407729
Length = 793
Score = 29.9 bits (64), Expect = 1.3
Identities = 15/41 (36%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Frame = -1
Query: 371 RSRVHPMSSPPRCFPSAMTCPSSNEA-CGEYQAVGSGLALP 252
R H P P AM PS N + C V SG+A+P
Sbjct: 376 RMAAHRSHDPQPTIPPAMVSPSGNRSSCASTGQVASGMAIP 416
>06_01_0734 + 5419951-5420475
Length = 174
Score = 29.1 bits (62), Expect = 2.3
Identities = 15/36 (41%), Positives = 18/36 (50%)
Frame = -1
Query: 308 SSNEACGEYQAVGSGLALPLALLKSMGDSNHSPSGR 201
S+ A + + G GL LA L MGD SP GR
Sbjct: 96 SAAAAAADRRGAGGGLMYLLAQLMGMGDGGGSPYGR 131
>05_05_0022 + 21592403-21593083,21593720-21594208
Length = 389
Score = 29.1 bits (62), Expect = 2.3
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = -1
Query: 356 PMSSPPRCFPSAMTCPSSNEACGEYQAVGSGLALPLALLKSMGD 225
P SSPP S+ T +S+ + Q G+G L L LL +G+
Sbjct: 30 PRSSPPPSPSSSSTTTTSSSLTAQRQPRGAGTMLCLPLLGRLGE 73
>08_01_0407 -
3613417-3613506,3613603-3613713,3613789-3613857,
3613936-3614091,3614156-3614222,3614375-3614470,
3614976-3615142
Length = 251
Score = 28.3 bits (60), Expect = 4.0
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = +1
Query: 223 LSPMDFSNARGRAKPLPTAWYSPQAS 300
+ P+ ++A+ +A P PT WY P +S
Sbjct: 1 MKPLKDADAQEKAAPPPTEWYDPLSS 26
>02_03_0319 - 17674595-17674772,17675925-17675995
Length = 82
Score = 27.5 bits (58), Expect = 6.9
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +1
Query: 184 GKRAYGLPDGEWLLSPMDFSNAR 252
G YG+ GEW L+ +DFS +R
Sbjct: 49 GGGKYGIAPGEWGLAGVDFSESR 71
>12_02_0996 -
25115643-25115708,25115869-25116107,25116484-25116577,
25116726-25116864,25116960-25117081,25117261-25117491,
25117583-25117644,25118335-25118461,25118890-25119183,
25119266-25119622
Length = 576
Score = 27.1 bits (57), Expect = 9.1
Identities = 10/21 (47%), Positives = 17/21 (80%)
Frame = +1
Query: 19 SRIFNTNGLPLIPGQIKRLNI 81
+R+ +T+GLPL+ Q+KRL +
Sbjct: 264 NRLLSTSGLPLLTRQMKRLQL 284
>11_08_0087 -
28271211-28271383,28271821-28271853,28271958-28272098,
28272215-28272274,28272838-28272909,28273734-28273785
Length = 176
Score = 27.1 bits (57), Expect = 9.1
Identities = 10/38 (26%), Positives = 18/38 (47%)
Frame = +2
Query: 401 MPVSSRTIPQSTPHGTYISRYLDCIRSTIIISWELCVC 514
+P S R +P + + + + TI+ +W LC C
Sbjct: 68 LPSSCRYVPTCSQYSMQAYKKYGVAKGTILTAWRLCHC 105
>05_04_0321 + 20235221-20235628,20235874-20236839,20238313-20238405
Length = 488
Score = 27.1 bits (57), Expect = 9.1
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = +1
Query: 193 AYGLPDGEWLLSPMDFSN 246
AY +P+G LLSPM F+N
Sbjct: 353 AYDIPEGHNLLSPMIFNN 370
>04_04_1515 +
34117383-34117732,34117833-34117918,34118227-34118297,
34118457-34118524,34118692-34118753,34119010-34119107,
34119545-34119626,34119935-34120077,34120233-34120381,
34120461-34120594,34120714-34120832,34120926-34121014,
34121398-34121515
Length = 522
Score = 27.1 bits (57), Expect = 9.1
Identities = 13/37 (35%), Positives = 23/37 (62%)
Frame = -1
Query: 350 SSPPRCFPSAMTCPSSNEACGEYQAVGSGLALPLALL 240
++PP F +A + P +A GEY ++G+ LP+ +L
Sbjct: 20 AAPPEAFAAAAS-PRRPQAAGEYGSLGALDVLPIDVL 55
>04_04_0824 -
28399144-28399385,28400193-28400312,28400422-28400453,
28400531-28400625,28400713-28400786,28400883-28401018,
28401096-28401333,28401508-28401555,28401593-28401780,
28401862-28401983,28402061-28402226,28402321-28402443,
28403068-28403139,28403244-28403351,28404212-28404328,
28404458-28404596,28404702-28404808,28404904-28405013,
28405141-28405274,28405348-28405497,28405571-28405791,
28405868-28406677,28410261-28410473
Length = 1254
Score = 27.1 bits (57), Expect = 9.1
Identities = 19/51 (37%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
Frame = +2
Query: 308 RDMS*RSGNTVEGSSLDELYSGGGR*DGKNEMPV-SSRTIPQ--STPHGTY 451
RD R G G + + Y GG R G +P SSRT+P+ PH Y
Sbjct: 201 RDYQGRGGPRPRGG-MPQPYYGGPRGSGGRSVPSGSSRTVPELHQAPHVQY 250
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,003,221
Number of Sequences: 37544
Number of extensions: 331244
Number of successful extensions: 904
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 888
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 904
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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