Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS318D03f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 30 0.18
SPBC12C2.03c |||FAD binding protein |Schizosaccharomyces pombe|c... 27 1.7
SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces p... 26 3.0
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 26 3.0
SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 26 3.9
SPCC18B5.03 |wee1||dual specificity protein kinase Wee1|Schizosa... 26 3.9
SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces po... 26 3.9
SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase Prp16|... 25 5.2
SPBP4H10.11c |||long-chain-fatty-acid-CoA ligase |Schizosaccharo... 25 5.2
SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 5.2
SPAC13F5.02c |ptr6|taf7|transcription factor TFIID complex subun... 25 5.2
SPAC959.03c |||U3 snoRNP-associated protein Utp7|Schizosaccharom... 25 5.2
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 25 6.8
SPCC594.02c |||conserved fungal protein|Schizosaccharomyces pomb... 25 6.8
SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p... 25 6.8
SPBC17D11.01 |nep1||nedd8 protease Nep1|Schizosaccharomyces pomb... 25 6.8
SPCC1450.02 ||SPCC191.13|bromodomain protein|Schizosaccharomyces... 25 9.0
SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyce... 25 9.0
SPBC146.12 |coq6||monooxygenase Coq6|Schizosaccharomyces pombe|c... 25 9.0
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1... 25 9.0
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 30.3 bits (65), Expect = 0.18
Identities = 36/120 (30%), Positives = 46/120 (38%), Gaps = 13/120 (10%)
Frame = -1
Query: 470 SSPMTPPSTTRVGRRRCFIDDFRPQLPPWDS---------GSGSGASTLTPRKAQRCSSK 318
S P PP ++RV + RP PP S G+GS S+L P S+
Sbjct: 288 SKPPLPPPSSRVSAAALAANKKRPPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNA 347
Query: 317 GVALRTPR*ASLSRLGASTPPPPPFAQSRCT---TSPYRGPRR-SNI*ASPSTVG*HSAP 150
++ P G S PPPPP + T P R SN A P + SAP
Sbjct: 348 AGSIPLPP------QGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAP 401
>SPBC12C2.03c |||FAD binding protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 571
Score = 27.1 bits (57), Expect = 1.7
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = +1
Query: 193 FDLRGPRYGLVVHRDWANGGGGGVDAPSRERD 288
F+L Y L +W GG GV AP+ E D
Sbjct: 160 FELDVSNYPLPEGEEWMVGGSFGVMAPNNEED 191
>SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1323
Score = 26.2 bits (55), Expect = 3.0
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +1
Query: 145 DVGAECHPTVEGDA*IFDLRGPRYGLVVHRDWANG 249
DV A C +++ +DLR PR+ + DW NG
Sbjct: 336 DVLATC--SIDSSVHCWDLRSPRFPVNSFYDWHNG 368
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 26.2 bits (55), Expect = 3.0
Identities = 16/44 (36%), Positives = 20/44 (45%)
Frame = -3
Query: 309 PPNTTLSIPLPTRRVNTPAPAVRPITMYDQPIPWAPKVKYLGVT 178
PP + + P PT NTPA T+ IP P V +G T
Sbjct: 211 PPGFSPATPAPTSAANTPA------TIAATSIPPVPNVPLVGAT 248
>SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 636
Score = 25.8 bits (54), Expect = 3.9
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = -1
Query: 206 PRRSNI*ASPSTVG*HSAPTSRRYAIVPPSS*DASTR 96
P SN + ST H P+S+R +++PP++ + +R
Sbjct: 314 PSGSNQASLRSTSTIHYTPSSKRISVIPPNTSNIGSR 350
>SPCC18B5.03 |wee1||dual specificity protein kinase
Wee1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 877
Score = 25.8 bits (54), Expect = 3.9
Identities = 20/90 (22%), Positives = 39/90 (43%), Gaps = 3/90 (3%)
Frame = -3
Query: 498 PRSPETHLALFADDTAIYYSCRKKALLHRRL---QTAATTMGQWFRKWRIDINPTKSTAV 328
P++ + +LF+D++ + S +L ++ + F++ + ST +
Sbjct: 326 PQTQQNESSLFSDNSMVNSSSNSFSLFPNATLPNPPSSELLTTPFQQIKPPSQVFMSTGL 385
Query: 327 LFKRGRPPNTTLSIPLPTRRVNTPAPAVRP 238
L K+ RP PLP + P+ VRP
Sbjct: 386 LSKQHRPRKNINFTPLPPSTPSKPSTFVRP 415
>SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 937
Score = 25.8 bits (54), Expect = 3.9
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = -3
Query: 375 FRKWRIDINPTKSTAVLFKRGRPPNTTLSIPL 280
F+ W+ P+ S +L ++G PP + LS L
Sbjct: 260 FQIWKAHNPPSSSKFILEQKGLPPESNLSSEL 291
>SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase
Prp16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1173
Score = 25.4 bits (53), Expect = 5.2
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = -2
Query: 349 PHEKHSGALQKGSPSEHHAEHPSPD 275
PHEKH L++ S + H E S D
Sbjct: 163 PHEKHFRPLRQRSSVDDHQEFESED 187
>SPBP4H10.11c |||long-chain-fatty-acid-CoA ligase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 689
Score = 25.4 bits (53), Expect = 5.2
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = +1
Query: 7 YTCIGHDGAYASFVECHLISKGHFTSP 87
Y +G DG Y S EC S+ FT P
Sbjct: 156 YETLGEDGIYTSLDECK--SRAIFTDP 180
>SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 262
Score = 25.4 bits (53), Expect = 5.2
Identities = 11/22 (50%), Positives = 11/22 (50%)
Frame = -3
Query: 303 NTTLSIPLPTRRVNTPAPAVRP 238
N T S PLPT N P P P
Sbjct: 172 NYTASSPLPTASANAPLPVPPP 193
>SPAC13F5.02c |ptr6|taf7|transcription factor TFIID complex subunit
Taf7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 393
Score = 25.4 bits (53), Expect = 5.2
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = -1
Query: 266 STPPPPPFAQSRCTTSPYRGPRRSNI 189
+T PPPP + + T +GPR + I
Sbjct: 22 ATGPPPPIPKIKIKTREPKGPRLTKI 47
>SPAC959.03c |||U3 snoRNP-associated protein
Utp7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 520
Score = 25.4 bits (53), Expect = 5.2
Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 3/70 (4%)
Frame = -3
Query: 327 LFKRGRPPNTTLSIPLPTRRVNTPAPAVRPITMYDQPIP---WAPKVKYLGVTLDSRMTF 157
L ++ RP +L+ V+ AP++R ++ P W PK K G R
Sbjct: 408 LLEKLRPEMISLNADF-IGNVDRAAPSLRKAEAEEEKPPEEKWVPKAKARGKNSALRRYL 466
Query: 156 RPHIKTVRDR 127
R H + V D+
Sbjct: 467 RKHARNVVDQ 476
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 25.0 bits (52), Expect = 6.8
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = -1
Query: 299 PR*ASLSRLGASTPPPPPFA 240
P+ A+ ++ A TPPPPP +
Sbjct: 1694 PQSAAPPQMSAPTPPPPPMS 1713
>SPCC594.02c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 489
Score = 25.0 bits (52), Expect = 6.8
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = -2
Query: 322 QKGSPSEHHAEHPSPD*ARQHPRPRRSPNHDVRPAHT 212
Q+G+ S +E+ + A P P+ N D+ PA T
Sbjct: 268 QRGTSSSQPSENDANITALPKPEPKMYENSDLTPART 304
>SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 275
Score = 25.0 bits (52), Expect = 6.8
Identities = 20/64 (31%), Positives = 25/64 (39%), Gaps = 2/64 (3%)
Frame = -2
Query: 334 SGALQKGSPSEHHAEHPSPD*ARQHPRPRRSPNHDVRPAHTVG--PEGQIFRRHPRQ*DD 161
SG L+ SPS H A SP + R SP + R G RR P++
Sbjct: 110 SGRLRSRSPSPHEARSRSPYNDERSDRRSMSPRYRSRSRSPDGRSRSPDYDRRSPKRNHR 169
Query: 160 IPPP 149
P P
Sbjct: 170 SPSP 173
>SPBC17D11.01 |nep1||nedd8 protease Nep1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 420
Score = 25.0 bits (52), Expect = 6.8
Identities = 16/44 (36%), Positives = 18/44 (40%), Gaps = 1/44 (2%)
Frame = -2
Query: 406 SDRSYHHGTVVPEVAHRH*PHEKHSGALQKGSPSEHHAEH-PSP 278
SD+ HH H H H HS SP+E H PSP
Sbjct: 290 SDKDLHHEG---HHHHHHHHHHHHSHDDDPSSPAEKKQNHVPSP 330
>SPCC1450.02 ||SPCC191.13|bromodomain protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 578
Score = 24.6 bits (51), Expect = 9.0
Identities = 20/71 (28%), Positives = 36/71 (50%), Gaps = 4/71 (5%)
Frame = -1
Query: 323 SKGVALRTPR*ASLSRL-GASTPPPPPFAQSR---CTTSPYRGPRRSNI*ASPSTVG*HS 156
S G AL+ L +L A P P +S+ +T+P R R S++ ++ ++V +
Sbjct: 174 SMGKALQEVFERQLKQLPDAEQPAAAPVKKSKQKSASTAPPRTRRNSSVSSTSASVAAST 233
Query: 155 APTSRRYAIVP 123
AP + A++P
Sbjct: 234 APKAASPAVLP 244
>SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 522
Score = 24.6 bits (51), Expect = 9.0
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = -3
Query: 336 TAVLFKRGRPPNTTLSIPLPTRRVNTPAPAVRPI 235
T+ + K+ RP NTT+ R V T AP+ I
Sbjct: 18 TSEISKKPRP-NTTVGFQFDNRNVGTSAPSTPAI 50
>SPBC146.12 |coq6||monooxygenase Coq6|Schizosaccharomyces pombe|chr
2|||Manual
Length = 466
Score = 24.6 bits (51), Expect = 9.0
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = -3
Query: 360 IDINPTKSTAVLFKRGRPPNTTLSIPLP 277
+ I+P K AV F+R P +PLP
Sbjct: 227 LKIDPLKGPAVAFQRFLPTGPLAYLPLP 254
>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1841
Score = 24.6 bits (51), Expect = 9.0
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = -1
Query: 263 TPPPPPFAQSRCTTSPYRGPRRSNI*ASPSTV 168
TPPPPP + + + + P NI A+ ++V
Sbjct: 906 TPPPPPPLPVKTSLNTFSHPDSVNIVANDTSV 937
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,417,836
Number of Sequences: 5004
Number of extensions: 56206
Number of successful extensions: 199
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 197
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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